Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1925 ATGTCAAACTCTTCAACTCCCCCAAATGAGTGTTGCATTGTTATTGCTAAAAAAGCCAGCTTTTATGACCAATCACACAACATGGTTTTCTTACAAACCTTGTTCTTCCTTTTACTTGTAACATTTGGTCACTCTTTTCCAAGGCACCACCACCACCACCACCACCCTTCTCATTCTTTACTCACCGATAGAGCTGCGCTTCTGGAATTCAGAAAAACAATCGTATCAGACCCGTTTTCCTCACTTGCAAACTGGTATGAAACTGTTCCTGTGTGCAACTTCACGGGTGTTGAATGTGACAGATCCCATAATCGTGTTATACGACTAATCCTATATGATAAAGGTCTTGTGGGGCTCCTTTCACCTGTTCTTTCCAATCTCACTGGACTGCATAACCTTGAGATAGTTCGAAGTCACCTATTTGGTATTATTCCCCCTGAATTTTCCAACCTCAGACGCATTCACAGCATCATCATTGAAGGGAATAATTTGCATGGCTCAATACCAGATTCCTTTTCCACGCTTTCCAAGCTTAACATTCTAGTCATTAAGGAAAATAACATATCGGGTTCGCTTCCTCCATCTCTCTTTTCAAACTGCACTCTGCTAAATGTTGTAGACTTCTCCAGCAACTCATTAAGTGGTCAAATCCCTGAAGAGATTGGAAACTGCAAAATCCTGTGGAGTATCAGTTTATACAATAATCTATTCACTGGTCAGCTTCCTGTCTCGCTGACCAATCTATCGCTTCAACATTTAGATGTGGAGTACAATTATCTATCTGGCGAATTACCTTCTAAGTTTGTTGGCAGCTGGCCTTATCTCCTTTACCTTCATTTATCATACAACAATATGGTAAGCCATGATAGCAACACCAATCTTGATCCTTTTTTCACTGCTCTCAAAAACAACAGTAATCTAGAGGAACTTGAATTGGCGGGAATGGGCCTTGGGGGAAGGTTCACCGATACTCTCCCCAGCCAACTCACCAACATAAGAACCCTGCTACTTCAGGAAAACCAAATTTTTGGATCAATTCCTCGCAGCTTAGCCAACCTTTCAAGGCTTTTTATTCTGAATTTAACATCCAATCTTCTGAATGGAACTATATCCTCAGATATATTCACATTGCCATGGTTGGAACAACTTTTCTTGTCACGCAACCATTTCAAAAATCCAATTCCAGAAGCAATAGGCAAGTGTCTCAATCTGGGTCTATTGGATCTGTCACATAACCAATTCTCAGGCAGGATTCCAGACAGTTTGGGAAATTTGGTTAGACTAAATTCATTGTTTCTCAACAATAATCTTCTCTCAGGAACAATACCTCCCACATTGGGACGGTGCAGTAATCTGTACAGGCTTGATTTATCCCACAATAGATTAACAGGAAGCATCCCACTGAAACTGGCAGGCTTGCGCGAGATCAGAATTTTCATAAATGTTTCTCATAACCACCTTGAAGGTGACCTGCCAATTGAGCTCAGCAAATTAGAAAAGGTTCAGGAGATAGATCTTTCGTCGAACTACCTGACTGGAAGTATCTTCCCTCAGATATCAGGATGTATTGCTGTTTCAATGATTAATTTTTCGAACAACTTCCTTCAAGGGGAGATCCCTCAGTCCCTGGGTGATCTGAGGAACCTTGAATCTTTTGATGTTTCACGAAATCAATTATCTGGATTGATACCAGCAAAACTTGGCAAAATTGAAACGCTCACTTTTCTCAATTTATCATTTAACAATCTGGAAGGAAAGATTCCATCTGGTGGTATCTTTAATTCAGTTTCAAACTTGTCATTCTTAGGGAATCCAAAACTCTGTGGGAAGATTGAAGGCATATCTTTGTGCTCTCAAAGGAGAAGATGGATTCATGCTCGTTTGTTATTGATTATATTGATTTTGGTGATCTTCGTATCAACCTTGTTGTCAATAATTTTCTGTGTAATTGGATGCAAGCATCTTAAAGTAATGATCAGCTCTCAGAGGACTGAGGCAAGAAAAAATGCAGCTAGAACAGAGTTGATTAGTAACTTCCCAAGAATCACGTACAAGGAACTGTCAGATGCCACTGGAGGATTTGACAATCAGAGACTTGTTGGATCAGGTAGTTATGGACGTGTCTATAGAGGTGTTCTCGCGGATGGGACACCAATAGCAGTCAAGGTGCTGCATTTGCAATCTGGAAATTCTACCAAGAGCTTCAACAGAGAATGCCAAGTTTTGAAGAGAATTAGACACAGGAATCTTATAAGGATTATCACAGCATGTAGCCTACCCGATTTTAAGGCTCTTGTTCTACCTTATATGACCAATGGCAGCTTGGAGAGTTGCCTCTATCCTTCTTCTGGATCATCAGACTTGAGTATTGTCCAGAGGGTGAATATTTGCAGTGATATAGCTGAAGGGATGGCCTATTTGCATCATCATTCTCCTGTCAGAGTCATACACTGTGATCTAAAACCAAGCAATTGTCTCCTCAATGATGACATGACAGCTCTCGTCTCTGATTTTGGGGTTGCAAGGCTGCTTATGAGTGCTGGAGTTGGGGCTACTGATAACATGGGCAACTCTAGTGCAAATTTGCTTTTTGGGTCTATTGGATACATTGCACCAGAATATGGATTTGGATCCAGTTCATCTATCAAAGGAGATGTCTATAGCTTTGGCATTCTAGTTCTTGAGATGGTGACCAGAAGAAGACCATTAGATGACATGTTTGTTGGTGGGTTAAGTCTGCACAAATGGGTAAAGGTTCATTTTCAAGGAAGGGTAGAAAAAGTGGTAGATCCTGCTTTGGTGACAGCCTCAAGAGATCAATCCCAAGAGGTTAGAAAGATGTGGGAAGTAGCTATTTCAGAGTTAATCGAGTTGGGACTTCTCTGCACACAAGAGTCACCTTCGACAAGACCAACCATGCTTGATGCAGCAGATGACTTAGATCGTCTCAAGAGATACCTTAATGGAGACACAGCAGGAACTTTTGCCTCGTCTCTAGGAATTTCATCTTCCACAATAGGTGGTGACTGCTGA 3033 0.4111 MSNSSTPPNECCIVIAKKASFYDQSHNMVFLQTLFFLLLVTFGHSFPRHHHHHHHPSHSLLTDRAALLEFRKTIVSDPFSSLANWYETVPVCNFTGVECDRSHNRVIRLILYDKGLVGLLSPVLSNLTGLHNLEIVRSHLFGIIPPEFSNLRRIHSIIIEGNNLHGSIPDSFSTLSKLNILVIKENNISGSLPPSLFSNCTLLNVVDFSSNSLSGQIPEEIGNCKILWSISLYNNLFTGQLPVSLTNLSLQHLDVEYNYLSGELPSKFVGSWPYLLYLHLSYNNMVSHDSNTNLDPFFTALKNNSNLEELELAGMGLGGRFTDTLPSQLTNIRTLLLQENQIFGSIPRSLANLSRLFILNLTSNLLNGTISSDIFTLPWLEQLFLSRNHFKNPIPEAIGKCLNLGLLDLSHNQFSGRIPDSLGNLVRLNSLFLNNNLLSGTIPPTLGRCSNLYRLDLSHNRLTGSIPLKLAGLREIRIFINVSHNHLEGDLPIELSKLEKVQEIDLSSNYLTGSIFPQISGCIAVSMINFSNNFLQGEIPQSLGDLRNLESFDVSRNQLSGLIPAKLGKIETLTFLNLSFNNLEGKIPSGGIFNSVSNLSFLGNPKLCGKIEGISLCSQRRRWIHARLLLIILILVIFVSTLLSIIFCVIGCKHLKVMISSQRTEARKNAARTELISNFPRITYKELSDATGGFDNQRLVGSGSYGRVYRGVLADGTPIAVKVLHLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMTNGSLESCLYPSSGSSDLSIVQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNCLLNDDMTALVSDFGVARLLMSAGVGATDNMGNSSANLLFGSIGYIAPEYGFGSSSSIKGDVYSFGILVLEMVTRRRPLDDMFVGGLSLHKWVKVHFQGRVEKVVDPALVTASRDQSQEVRKMWEVAISELIELGLLCTQESPSTRPTMLDAADDLDRLKRYLNGDTAGTFASSLGISSSTIGGDC* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1925 1010 SMART serkin_6 694 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1925 1010 SUPERFAMILY L domain-like 321 609 - -
Vra5g1925 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Vra5g1925 1010 SMART LRR_typ_2 377 401 IPR003591 -
Vra5g1925 1010 SMART LRR_typ_2 175 199 IPR003591 -
Vra5g1925 1010 SMART LRR_typ_2 546 569 IPR003591 -
Vra5g1925 1010 SMART LRR_typ_2 329 353 IPR003591 -
Vra5g1925 1010 SMART LRR_typ_2 425 449 IPR003591 -
Vra5g1925 1010 SUPERFAMILY Protein kinase-like (PK-like) 673 980 IPR011009 -
Vra5g1925 1010 Gene3D Ribonuclease Inhibitor 250 622 IPR032675 -
Vra5g1925 1010 Pfam Leucine rich repeat N-terminal domain 62 100 IPR013210 -
Vra5g1925 1010 Gene3D Phosphorylase Kinase; domain 1 675 769 - -
Vra5g1925 1010 ProSitePatterns Protein kinases ATP-binding region signature. 700 722 IPR017441 GO:0005524
Vra5g1925 1010 ProSiteProfiles Protein kinase domain profile. 694 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1925 1010 Pfam Protein kinase domain 695 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1925 1010 SUPERFAMILY RNI-like 106 391 - -
Vra5g1925 1010 Gene3D Transferase(Phosphotransferase) domain 1 770 993 - -
Vra5g1925 1010 PANTHER OS06G0186100 PROTEIN 51 989 - -
Vra5g1925 1010 ProSiteProfiles Leucine-rich repeat profile. 451 474 IPR001611 GO:0005515
Vra5g1925 1010 Gene3D Ribonuclease Inhibitor 62 175 IPR032675 -
Vra5g1925 1010 Gene3D Ribonuclease Inhibitor 176 249 IPR032675 -
Vra5g1925 1010 CDD STKc_IRAK 700 983 - -
Vra5g1925 1010 PANTHER OS04G0122200 PROTEIN 51 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1925 Vra-Chr5 25048673 25052355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1925 62 970 Receptor kinase-like Gene Family AT3G47570 35.494 3.98e-167 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vra5g1925 Pkinase 7.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1925 - - vra:106761694 1920.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1925 5 25048673 25052355 Vra5g1925 5 25048673 25052355 ECH