Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1922 ATGGCTGCCAAAACCTCACACAAAACCCTCTGCGTCGACTCTCCCATGCTCAAGAAGAAGCGCCCACGCAAAACCATTCCAAGAGACACTCCCTTGCCACGAACCTCACCCTACAGGGGTGTTACCAGGCATCGATGGACAGGTCGATACGAGGCTCATCTCTGGGATAAAACTTCCTGGAACCAAGCGCAGAACAAGAAAGGAAGACAAGTATATCTGGGAGCATACGACGATGAAGATGCTGCGGCACGTGCTTACGATTTGGCAGCATTGAAGTATTGGGGTCCGGAAACCCTCCTCAATTTCCCGGTATCAAATTATGAAGAGCAGCTTAAGGAGATGGAGGATCAATCCAAGGAAGAGTATATCGGATCCTTAAGAAGAAAAAGTAGCGGGTTCTCTCGGGGAGTCTCAAAATTCAGAGGCGTAGCAAGACACCATCACAATGGAAGATGGGAAGCACGAATTGGCAGAGTCTTCGGCAATAAATATCTATACCTTGGAACATACGGTACAGAAGAAGAAGCAGCAGTGGCGTACGATATGGCGGCCATAGAATACCGTGGACTTAATGCTGTTACCAACTTTGACCTCAGTCGTTATATGAAATGGCTACGTCCAAAAGACCAATCTCAACCTCAACTTCAAGCCCACAATGACAGCCCAAGCCCAAGCCCAACACCATCTGGATCTGCAACATTGGGCCCTTTACCGCCGCTGCCACCTTCTTCACCCTCCACCTCAAACCTTCCTCCTCGTCCTCCTCGCACATTCCCCGAAGATATTCAAACTTTGTTTGAAACTCAAGATTCAGCTGGAATCTACACAGACACTGATGACATTATATTTGGCGACTTGACCTCCATTGCTTCACCAATTTTTCATTGTGACCTTAATGCTTGA 903 0.4784 MAAKTSHKTLCVDSPMLKKKRPRKTIPRDTPLPRTSPYRGVTRHRWTGRYEAHLWDKTSWNQAQNKKGRQVYLGAYDDEDAAARAYDLAALKYWGPETLLNFPVSNYEEQLKEMEDQSKEEYIGSLRRKSSGFSRGVSKFRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTEEEAAVAYDMAAIEYRGLNAVTNFDLSRYMKWLRPKDQSQPQLQAHNDSPSPSPTPSGSATLGPLPPLPPSSPSTSNLPPRPPRTFPEDIQTLFETQDSAGIYTDTDDIIFGDLTSIASPIFHCDLNA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1922 300 MobiDBLite consensus disorder prediction 1 40 - -
Vra5g1922 300 ProSiteProfiles AP2/ERF domain profile. 37 103 IPR001471 GO:0003700|GO:0006355
Vra5g1922 300 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 222 - -
Vra5g1922 300 SUPERFAMILY DNA-binding domain 138 199 IPR016177 GO:0003677
Vra5g1922 300 ProSiteProfiles AP2/ERF domain profile. 139 197 IPR001471 GO:0003700|GO:0006355
Vra5g1922 300 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vra5g1922 300 PRINTS Ethylene responsive element binding protein signature 179 199 IPR001471 GO:0003700|GO:0006355
Vra5g1922 300 Pfam AP2 domain 138 189 IPR001471 GO:0003700|GO:0006355
Vra5g1922 300 Pfam AP2 domain 38 95 IPR001471 GO:0003700|GO:0006355
Vra5g1922 300 MobiDBLite consensus disorder prediction 209 259 - -
Vra5g1922 300 CDD AP2 138 199 IPR001471 GO:0003700|GO:0006355
Vra5g1922 300 SMART rav1_2 37 109 IPR001471 GO:0003700|GO:0006355
Vra5g1922 300 SMART rav1_2 139 203 IPR001471 GO:0003700|GO:0006355
Vra5g1922 300 SUPERFAMILY DNA-binding domain 36 105 IPR016177 GO:0003677
Vra5g1922 300 MobiDBLite consensus disorder prediction 229 258 - -
Vra5g1922 300 Gene3D AP2/ERF domain 138 199 IPR036955 GO:0003700|GO:0006355
Vra5g1922 300 Gene3D AP2/ERF domain 37 105 IPR036955 GO:0003700|GO:0006355
Vra5g1922 300 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 222 - -
Vra5g1922 300 MobiDBLite consensus disorder prediction 209 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1922 Vra-Chr5 25033896 25037163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1922 12 232 AP2-EREBP Transcription Factor Family AT1G72570 58.824 2.21e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vra5g1922 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1922 K09285 - gmx:100807781 388.267