Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1921 ATGAAGAAGACGAATGCTTTGTCGGTCTCAACCACACGCACTTACAGTTCTCTCTACTTCAATCCTCTGAACCACCCCAGCCACTGCCGAAGCTCCAGCACGGACTGTGTCGGAAAATCTCAGTTTGAATTTGAAGATGAGCACCCCGACAAGGAAAACCACAATGTCAATGTCAACAAGCCCAAGCCTTTCAGGTCTCTCTCCACTGACAGAATCTTGAAGCCCTCCTCCCTTGAATTCTGCATGCAGATGAACCACTTTCAAACCTCCCTCAACATCTGGGACTACTCTGATTCCGAGTCTGCTCCTGCTTCCTCCTGGTCCACACTGCCTAACAAGTCCTTGATCTGTAGACCCTTGCCCTTAGATGTTGGAAGGTGCACATGTTTTATTCTCAAGGAGCCAACGCCACATGGACTGTCAGGGGGCACTTTCTTCTCTCTTTATACCAATGAAGGCCAGGGACGGCAGAACAGGAAACTGGCCGTGGCCCACCACAAACGGCGGAATGGAAGGTCTTACTTCACCGTAGCTCAGAATGTAAAAGGATTACTCTCCCATTCTGATGATACTTTTCTTGGCACAGTAACAGCTAACCTCATCGGCTCAAAATACTACATTTGGGATCAGGCGTATTGTCGTAATTCCGGCGGTAAACAACCAAAGCCACCTCTTGCTGTTGTGACCTATATACCCACCATAACAACGTGTACAGGAAGTCACAGAAGCATGAGAGCATATGTACCCAAGCATCAATGCGTGCCACTCAAGAACACAAACCAGGTACAACATATAAAGGGATTGCCAATTAATTGGGAGGGAAAGCTGGACAAAGTCCATCAACTGTTCTCAAAGGCCCCACTTTACAACAAGATTTCAAAGCAATATGAGCTTGACTTCAGAGATAAAGGAAAGGCAGGACTCAAAATCCAAAGATCAGTTAAAAATTTCCAGCTAACTTTAGAGGAGAATGGGAGTCAGACGATACTGCAGCTGGGGAGGGCAGGAAAATCAAAATTCGTCATGGACTACAGGTACCCTTTGACAGGTTACCAGGCGTTTTGCATGTGTTTAGCTTCCATGGATGCAAAACTCTGTTGCACAGTGTAA 1110 0.4658 MKKTNALSVSTTRTYSSLYFNPLNHPSHCRSSSTDCVGKSQFEFEDEHPDKENHNVNVNKPKPFRSLSTDRILKPSSLEFCMQMNHFQTSLNIWDYSDSESAPASSWSTLPNKSLICRPLPLDVGRCTCFILKEPTPHGLSGGTFFSLYTNEGQGRQNRKLAVAHHKRRNGRSYFTVAQNVKGLLSHSDDTFLGTVTANLIGSKYYIWDQAYCRNSGGKQPKPPLAVVTYIPTITTCTGSHRSMRAYVPKHQCVPLKNTNQVQHIKGLPINWEGKLDKVHQLFSKAPLYNKISKQYELDFRDKGKAGLKIQRSVKNFQLTLEENGSQTILQLGRAGKSKFVMDYRYPLTGYQAFCMCLASMDAKLCCTV* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1921 369 Gene3D Tubby Protein; Chain A 108 368 IPR025659 -
Vra5g1921 369 PANTHER TUBBY-LIKE PROTEIN 8 1 367 - -
Vra5g1921 369 SUPERFAMILY Tubby C-terminal domain-like 104 368 IPR025659 -
Vra5g1921 369 PRINTS Tubby superfamily signature 192 216 IPR000007 -
Vra5g1921 369 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Vra5g1921 369 PRINTS Tubby superfamily signature 325 344 IPR000007 -
Vra5g1921 369 PRINTS Tubby superfamily signature 346 368 IPR000007 -
Vra5g1921 369 Pfam Tub family 118 362 IPR000007 -
Vra5g1921 369 PANTHER TUBBY-RELATED 1 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1921 Vra-Chr5 25031093 25033696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1921 64 262 TUB Transcription Factor Family AT1G16070 55.251 2.55e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vra5g1921 Tub 1.5e-39 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1921 K19600 - gmx:100803500 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1921 5 25031093 25033696 Vra5g1921 5 25031093 25033696 ECH