Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1918 ATGAAGCTCACCGTCAAGACTTTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTATTATGGCTGTGAAGAAAAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGACAGCAATTGCTGATTCACAATGGTAAGGTTTTGAAAGATGAAACTACATTAGCAGACAATAAAGTCTCTGAGGATGGCTTTCTTGTTGTAATGCTTAGTAAGAGTAAAACCTTGGGATCTGCTGGCACTTCATCAAGTCAGCCTGCTAGCAACCCACCTATAACTGTATCAACACCAAATTCCTCGTCTCTAGTACAAACCCAATCTGCTAACAATAATGCTCCTGCAACAGATGTCACAACTACAAATGTGACTACGGATACTTATGGGCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAGCAAATTATAGACATGGGTGGTGGCAGTTGGGACAGAGATACAGTTAATCGTGCTCTCCGAGCAGCTTACAATAACCCAGAGCGTGCTGTGGACTACCTGTATTCAGGAATTCCTGAAGCTGCAGAAATTGCTGTGCCAGCTGCTCCTTACCCAAGTAGTCAGACAACTGAAACAGGTGGGGTCACTGCCGGAGCTGTTCCCGGTGTCCCTAACTCGTCTCCCTTGAACATGTTTCCACAGGAGGCAATTTCTGGTGTTGGAGCCGGAATTGGGTCACTTGACTTTCTAAGAAACAATCCCCAGTTTCAAGCATTGCGATCAATGGTGCAATCCAATCCGCAAATTCTGCAGCCTGTACTTCAGGAGCTTGGAAAGCAGAATCCTGGTCTCTTAAGAGTCATTCAAGAGCATCATGCTGAGTTTCTCCAGTTGATTAACGAACCTATTGAGGGTTCAGAAGGTGATATATTTGATCAACCTGAGCAAGACATGCCTCATGCAATCAATGTGACGCCTGCTGAGCAGGAGGCAATTGGAAGGCTTGAAGCCATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTAGCATGTGACCGTGACGAGCAATTGGCAGCCAACTACTTATTAGAAAATGCTGGAGATTTTGAGGATTAA 1104 0.4447 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGTSSSQPASNPPITVSTPNSSSLVQTQSANNNAPATDVTTTNVTTDTYGQAASNLVAGSNLEQTIQQIIDMGGGSWDRDTVNRALRAAYNNPERAVDYLYSGIPEAAEIAVPAAPYPSSQTTETGGVTAGAVPGVPNSSPLNMFPQEAISGVGAGIGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRVIQEHHAEFLQLINEPIEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1918 367 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vra5g1918 367 SUPERFAMILY UBA-like 141 191 IPR009060 GO:0005515
Vra5g1918 367 SUPERFAMILY XPC-binding domain 240 305 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vra5g1918 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 142 185 IPR015940 -
Vra5g1918 367 SMART ubq_7 1 75 IPR000626 GO:0005515
Vra5g1918 367 Pfam XPC-binding domain 242 297 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vra5g1918 367 Gene3D - 137 187 - -
Vra5g1918 367 MobiDBLite consensus disorder prediction 81 123 - -
Vra5g1918 367 Gene3D - 233 297 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vra5g1918 367 Gene3D - 1 80 - -
Vra5g1918 367 Gene3D - 314 362 - -
Vra5g1918 367 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Vra5g1918 367 TIGRFAM rad23: UV excision repair protein Rad23 1 366 IPR004806 GO:0006289
Vra5g1918 367 CDD UBA1_Rad23_plant 138 187 - -
Vra5g1918 367 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vra5g1918 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 321 361 IPR015940 -
Vra5g1918 367 SMART uba_6 144 184 IPR015940 -
Vra5g1918 367 SMART uba_6 323 360 IPR015940 -
Vra5g1918 367 SMART CBM 240 283 IPR006636 -
Vra5g1918 367 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 366 - -
Vra5g1918 367 SUPERFAMILY UBA-like 302 364 IPR009060 GO:0005515
Vra5g1918 367 CDD Ubl_Rad23 1 74 - -
Vra5g1918 367 Pfam UBA/TS-N domain 323 358 IPR015940 -
Vra5g1918 367 Pfam UBA/TS-N domain 144 182 IPR015940 -
Vra5g1918 367 PRINTS DNA repair protein Rad23 signature 268 290 IPR004806 GO:0006289
Vra5g1918 367 PRINTS DNA repair protein Rad23 signature 317 333 IPR004806 GO:0006289
Vra5g1918 367 PRINTS DNA repair protein Rad23 signature 334 348 IPR004806 GO:0006289
Vra5g1918 367 PRINTS DNA repair protein Rad23 signature 349 364 IPR004806 GO:0006289
Vra5g1918 367 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1918 Vra-Chr5 24983954 24988899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1918 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 41.892 4.18e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1918 K10839 - gmx:100804038 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1918 5 24983954 24988899 Vra9g0055 9 363006 369406 PCT