Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1914 ATGGAGTGTAGAGAAGTCAACGTGGTTTCCACCGAACCGGTTGTATATATACATACAGAGAGAAAGGAAGAAAATCATTGCATGTGTTTGATGATGGAGTCAAGAAAAAGCGCAGTGTTGCTGATATTTGTTTCAGTTTCAGTGTGGCAGCTGCAGGGTGGAAGTAGCAGTGTTGTGGTATCGAAGGATGGGAGTGGAGATTATAGAACGGTGGGTGAAGCCATTATGCAGGCTCCTGACATGAGTGATAGACCCTATACCATTCACGTACGAGCAGGCACTTATCAAGAGTACCTCTTCGTTCCTCCTCATAAGACTAACATTAGGCTCCTTGGAGATGGACCTCACCACACCAAAATAGTAGGCTACCAAAATGGTTCCACCATTGACATTCGTGGAGATGGGTTCATGGCAGCGAAGATGGGATTTGCGAACTGGGCAGGCTTGAATGCAAGCAGTGCAGTGGCGGTTCGGAACGAGGCAGACAAGAGCATATTCTTCCAATGCTCCATCGAAGGGCTCCAGGACACACTGTGGGCGGTTTCGGGGCGTCAGTTCTACAAAAAGTGCGATATCTACGGCACGGTGGACTTCATCTACGGCAGCGCAGCGGCGGTGTTCCAGGACTGCATGGTGTACGCGCGGTTCAGAGAGTACGTGACGTTCACGGCTCAGTCGCGAGAGGATCCGAATGAGAAAAGCGGGTTCAGTTTCCAAAGATGCGAATTCAGAATGTCGCCGGAGGATGAGAACAGAAAGAGAGAGGTGCATGCGAGCCTTGGGCGTCCCCTGAGACCCTATTCCACCGTCGCCATCCTCCACTCGTACATTGACTCCATCGTCGATCCTAAAGGTTGGGAGCCCATGCCCCACCAGCCCACCGACAAAGTCACCTACATCGAGTTTCAGAATGTTGGGCCGGGCTCTAACACCGACGATAGAGTTAACTGGGCCGGCGTGACGGTCCTTAGACACCCGGCCCAAGCAGCCCATTTCACTGCCTCCTATCTCTTAGACGCCGACTCTTGGATTCCCTCCACCGGTGTTCCCTACAACACTGGACTATAG 1068 0.5197 MECREVNVVSTEPVVYIHTERKEENHCMCLMMESRKSAVLLIFVSVSVWQLQGGSSSVVVSKDGSGDYRTVGEAIMQAPDMSDRPYTIHVRAGTYQEYLFVPPHKTNIRLLGDGPHHTKIVGYQNGSTIDIRGDGFMAAKMGFANWAGLNASSAVAVRNEADKSIFFQCSIEGLQDTLWAVSGRQFYKKCDIYGTVDFIYGSAAAVFQDCMVYARFREYVTFTAQSREDPNEKSGFSFQRCEFRMSPEDENRKREVHASLGRPLRPYSTVAILHSYIDSIVDPKGWEPMPHQPTDKVTYIEFQNVGPGSNTDDRVNWAGVTVLRHPAQAAHFTASYLLDADSWIPSTGVPYNTGL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1914 355 PANTHER PECTINESTERASE 37 354 - -
Vra5g1914 355 Pfam Pectinesterase 58 340 IPR000070 GO:0030599|GO:0042545
Vra5g1914 355 PANTHER PECTINESTERASE 37 354 - -
Vra5g1914 355 Gene3D - 55 355 IPR012334 -
Vra5g1914 355 SUPERFAMILY Pectin lyase-like 57 353 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1914 Vra-Chr5 24965771 24968043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1914 56 355 Carbohydrate Esterase AT4G03930 41.534 2.04e-75 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1914 K01051 - gmx:102665195 494.197