Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1913 ATGGCCATTGAAACAGAGCAGGGGAAGGACTTCATTTTCAGGTCCAAGCTTCCTGATATATACATCCCCAAAAACCTTCCCCTCCACGCCTACTGCTTCCAAAATTTGCCAGACCACGCCTCACGCCCTTGCTTGATCAATGCCCCCACCGGAAAAGTCTACACCTACTCCGACGTCGACGCCACCGCCCGAAAAGTGGCGGCCGGCCTCCACAGATTGGGCGTGCGACAGGGCGAGGTCATCATGATCCTTCTCCCCAACTGCCCCGAATTCGTCTTTGCGTTTCTCGGGGCGTCTCATCGCGGCGCCGTGGCCACTGCGGCCAACCCCTTCTTCACCCCGGCGGAGATTGCGAAGCAAGCCAAGGCATCCAAGGCCAAGGTGCTCATCACGCAGGCCTCTTACTACGAAAAGGTGAAGGAGCTGGAGGAGGTGAAGTTGGTGTTCGTGGACACGTGTCCGGTGGCGGAGGCAGACGGCGTTCACGTCCATTTCTCAGAGTTGTGTGAGGGCGACGGGGAGATGGATGAGGTGGAGATAAGAGCGGATGATGTGGTGGCATTGCCGTATTCGTCGGGGACAACGGGGCTTCCGAAAGGTGTGATGCTGACGCACAAGGGGCTGGTGACGAGCATTGCTCAGCAGGTGGACGGCGAGAATCCGAACCTCTACTACCATCCCGACGACACCATCCTCTGCGTGCTTCCCCTGTTCCATATATACTCCCTCAACTCTGTTCTTCTCTGTGGCTTGCGTTCCAAGGCTGCCATTCTCCTCATGCCCAAGTTCGAAATCAACGCCCTCCTCGCCCTCATTCAGAAACACAGAATCACCGTTGCCCCCGTCGTCCCACCCATCGTTCTCGCCGTTGCCAAGTCACCTGATCTCGCCAACTACGACCTCTCTTCCATCAGGCTCTTCAAGTCCGGCGGAGCCCCTCTCGGTAAAGAGCTTGAAGACACTGTGAGGGCCAAATTCCCCAACGCCAGACTCGGCCAGGGTTACGGTATGACTGAGGCAGGCCCTGTGCTCACAATGTCCTTAGCTTTTGCTAAAGAACCCATGCACGTGAAAGCAGGTGCATGCGGAACCGTTGTGAGAAACGCAGAGATGAAGATCGTGGATCCTGAAACCGCCCAATCCCTACCTCGAAACCAGTCCGGTGAAATCTGCATAAGAGGCGACCAGATCATGAAAGGTTATCTGAACGACAAAGAGGCTACAGAGAGAACGATAGACAAAGATGGGTGGTTGCACACAGGTGACATCGGTTACATCGACGATGACGATGAGTTATTCATCGTTGACAGGTTAAAGGAACTTATCAAATACAAAGGGTTTCAGGTGGCTCCGGCTGAACTCGAAGCCCTTCTTCTCACTCATCCTAACATCTCTGACGCTGCCGTCGTTCCAATGAAGGATGAAGCGGCCGGAGAAGTACCTGTGGCATTTGTTGTGAGATCAAATTCTTCCATCGACACAACCCAGGATGAAATCAAGAACTTCATCTCCAAACAGGTGGTGTTTTACAAGAGAATAAACACAGTATTCTTCGTTGATGCAATTCCCAAGTCACCCTCAGGCAAAATCTTGCGTAAGGATCTACGAGCAAAGCTAGCAGCACCAGCAGCTGCATCACAATGA 1644 0.5365 MAIETEQGKDFIFRSKLPDIYIPKNLPLHAYCFQNLPDHASRPCLINAPTGKVYTYSDVDATARKVAAGLHRLGVRQGEVIMILLPNCPEFVFAFLGASHRGAVATAANPFFTPAEIAKQAKASKAKVLITQASYYEKVKELEEVKLVFVDTCPVAEADGVHVHFSELCEGDGEMDEVEIRADDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYYHPDDTILCVLPLFHIYSLNSVLLCGLRSKAAILLMPKFEINALLALIQKHRITVAPVVPPIVLAVAKSPDLANYDLSSIRLFKSGGAPLGKELEDTVRAKFPNARLGQGYGMTEAGPVLTMSLAFAKEPMHVKAGACGTVVRNAEMKIVDPETAQSLPRNQSGEICIRGDQIMKGYLNDKEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPNISDAAVVPMKDEAAGEVPVAFVVRSNSSIDTTQDEIKNFISKQVVFYKRINTVFFVDAIPKSPSGKILRKDLRAKLAAPAAASQ* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1913 547 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 541 - -
Vra5g1913 547 Pfam AMP-binding enzyme C-terminal domain 453 529 IPR025110 -
Vra5g1913 547 Gene3D - 440 542 IPR045851 -
Vra5g1913 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 541 - -
Vra5g1913 547 SUPERFAMILY Acetyl-CoA synthetase-like 10 541 - -
Vra5g1913 547 Pfam AMP-binding enzyme 39 444 IPR000873 -
Vra5g1913 547 CDD 4CL 22 535 - -
Vra5g1913 547 Gene3D - 10 439 IPR042099 -
Vra5g1913 547 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1913 Vra-Chr5 24962914 24965066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1913 5 507 Monolignol Biosynthesis Gene Families AT1G51680 70.565 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1913 K01904 - gmx:100819192 861.292