Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1910 ATGCATTCCATCATCTTCACCATGTGGCTTATTTTCTTGTCTTGCTTCTTGTATGCTGTCTCTGCACTCAGCTCCGATGGGGTCACCCTGTTGTCACTCACGAGGCACTGGAAATCCGTGCCTCCTTCCATAAACACCACCTGGCTCGCCTCTGATTCCACTCCATGCTCCTCCTGGGTAGGACTTCAATGTGACCATGCCCACCATGTCATCTACCTTAACCTCACAGGTTATGGGATTTCTGGTCAATTAGGTCCTGAAATTGGAAACATTTCTCGCCTACAGTACTTAGACCTTACAGGTAACAACCTCAATGGCCCAATACCTCACTCCTTAAAAAACTTGCACAGCCTCCAGTTTCTCAGCCTTGCTCAAAATCAGCTATCTGGTGAAATTCCACATTCCTTGTCTCAAATACCTGGACTGCAGCTTGTTGATCTATCATATAACCTTTTAAGGGGTTCCATCCCCACTAGCATTGGGAACATGTCTGAGCTCCTGCTGTTGTATCTTCAGAGTAACCAGTTGTCCGGGACAATTCCTTCATCCATTGGGAATTGCAGTAAATTGCTAGAATTGTATCTGGATAGGAATCAGTTGGAGGGTGTCCTGCCTCAGAGTCTAAATAATCTCGGTCTTCTGGATCATTTTGATGTCTCCGGTAATAGACTTACGGGTACTGTTTCTTTGGGTTCACCTAGTTGTAAAAATTTAGTAGTTTTGGATCTTTCAGACAATGACTTTAGTGGTGGCCTTCCCTCAAGCCTGGGGAACTGTAGTAGTTTATCCGAACTTGTTGCCGTGAACTGCAATTTGGTAGGGAATATTCCACCCTCCTTTGGCCTATTAACCAAGCTTTCGATTCTATACCTTCCACTAAACCGTTTATCTGGAAAAATACCTCCAGAAATTGGCAACTGCAACTCTCTGACAGAGTTACAGCTGTATTCCAATCGACTTGAGGGAAACATTCCAAGTGAATTGGGAAAACTAAGAAAACTGGTTGATTTGCAATTGTTTTCAAATCAATTGACTGGTGAAATTCCACTCAGCATCTGGAAGATTAAAGGTCTTCAATCTCTGCATCTGTATAATAACAGTCTTTCTGGAGAATTGCCATTGGAGATTGCAGAGCTCAGGCAGCTGAAAAACATCACTTTGTTTAGCAACCAGTTTTCCGGTGTTATACCTCAAAACTTGGGAATTAACAGTAGTTTAGTTCTGTTGGACTTCACAAGTAATAAATTCACTGGCAACATCCCACCAAATCTGTGTTTTGGGAAGAAGTTAAAGATCCTGAATTTGGGCATCAATCAACTTCAAGGTAGCGTACCTCCTGATGTTGGGAGCTGTACAAGCCTTACAAGATTAATCCTCAAACAGAATAATTTTACTGGGCCTCTTCCTCATTTTAAGAGCTGTCAAAATCTCGTTTATATGGAGATTGGCAACAACAAAATTCATGGAACAATTCCATCAAGTTGGGGAAACTGCACACGTATCACTGACTTAATTCTGTCCATGAACAAATTTACAGGGCCAATACCATCAGAGCTAGGGAACCTGGTGAATCTTCGGACTTTGAATCTCGCTCACAACAACTTAGAAGGTCCTTTGCCCTCTCAGCTATCAAAGTGCACCCAAATGGACAGGTTTGATGTCGGATTCAATTTCCTAAATGGTTCATTGCCATCAAGTCTGCAGAACTGGACAAGGCTAACCACATTAATTTTGAGCGAGAATCGCTTTAGTGGGGGCCTCCCATCTTTCCTGTCGGAATTCAAAATGATTTCTGAGCTACAACTTGGTGGCAATCTGTTCGGAGGCAAAATTCCCATATCAGTTGGAGCAATGCAGAACTTGATCTATGGTTTGAATCTAAGTTCAAATAGGTTGACTGGTGAAATTCCTGTAGAGATTAGGAACCTGAAAATGTTGCGAACACTGGATCTGTCTCATAACAATTTGACAGGAAGCATAGAAGTTCTTGGTGAACTCATCTCCTTAGTGGAACTCAATATTTCATACAATTCTTTTCGTGGTCTTGTACCAAACACGCTGATGAAGTTGCTTAATTGTCCCTTGTCATCGTTCCTGGGCAATCCTGGCCTATGCATCAGATGTTCAGCGTCAGATTGCTTGGCTTGCTCGGAAAGAAGCTCTCTAAAATCATGCGATGACAAATCTACTAAACGGAAAGGCTTGAGTAAAGTTCAAACTGTGAAGATGTTTCTTGGATTGTCCATATTTCTTGGTTTGTCGTTACTGGCATTAGTTTGTGTTATTGTTTTTGGGAGAACAGCTAAGCAGGAAAACCATATCTCTTCTGAACAGGGTTCTTCATCCCTTCTTAACAAAGTCATGGAGGCTACAGAAAACCTAAATGATCGATATATTATTGGTAGAGGAGCCCACGGAATTGTTTATAAAGTTGTGATAGGTCCAGACAAAGCTTTTGCGATGAAAAAGATAAGATTTACTGCGAGTCAAGGTAAGAACTCAAGCATGGCCAGAGAAATTCAGACCCTTGGGAAAATCAGGCATCGAAATCTTGTCAAATTGGAAGACTTTTGGTTGAGAAAAGATTGTGGTCTAATTTTGTATAGCTACATGGCAAATGGAAGTCTCCATGATGTTTTGCATGAAAGGGTTCCAACACCAACCTTAAAGTGGAATGTCCGGTATAAGATAGCTGTTGGAATTGCTCATGGATTAGCTTATCTCCACTATGACTGTGACCCTCCGATCGTGCACCGAGACATCAAGCCCAGCAATATACTTCTAGACTCTGACATGCTGCCTCACATTGCTGACTTTGGTATTGCCAAACTTCTGGAACAGTCTTCTCCTGCTTCAAATACTTCCATTGCTGTGCCAGGTACAATTGGTTATATTGCTCCAGAGAATGCTTATGCAACAACAAGTAGTAGGGAGTCTGATGTGTACAGTTACGGGGTTGTTTTGCTTGAGCTGATAACAAGAAAGAAGGCAGTCACAGATCCTTCGTACGAGGATGGTGTTTTGGTGGATTGGGTTAGGTCTGTCTGGAGGGAAACAGGACAAATTCATCAAATTGCTGATTCAATACTTTCCTGCGAATTTGCTGATACCCATATAATGGAAAACCTTATCAAAGTGCTTATGGTTGCTTTGAGATGTACTGAGAAGGATCCACACGAGAGACCCACAATGAGAGATGTTATTCATCAATTAAACTAG 3219 0.4194 MHSIIFTMWLIFLSCFLYAVSALSSDGVTLLSLTRHWKSVPPSINTTWLASDSTPCSSWVGLQCDHAHHVIYLNLTGYGISGQLGPEIGNISRLQYLDLTGNNLNGPIPHSLKNLHSLQFLSLAQNQLSGEIPHSLSQIPGLQLVDLSYNLLRGSIPTSIGNMSELLLLYLQSNQLSGTIPSSIGNCSKLLELYLDRNQLEGVLPQSLNNLGLLDHFDVSGNRLTGTVSLGSPSCKNLVVLDLSDNDFSGGLPSSLGNCSSLSELVAVNCNLVGNIPPSFGLLTKLSILYLPLNRLSGKIPPEIGNCNSLTELQLYSNRLEGNIPSELGKLRKLVDLQLFSNQLTGEIPLSIWKIKGLQSLHLYNNSLSGELPLEIAELRQLKNITLFSNQFSGVIPQNLGINSSLVLLDFTSNKFTGNIPPNLCFGKKLKILNLGINQLQGSVPPDVGSCTSLTRLILKQNNFTGPLPHFKSCQNLVYMEIGNNKIHGTIPSSWGNCTRITDLILSMNKFTGPIPSELGNLVNLRTLNLAHNNLEGPLPSQLSKCTQMDRFDVGFNFLNGSLPSSLQNWTRLTTLILSENRFSGGLPSFLSEFKMISELQLGGNLFGGKIPISVGAMQNLIYGLNLSSNRLTGEIPVEIRNLKMLRTLDLSHNNLTGSIEVLGELISLVELNISYNSFRGLVPNTLMKLLNCPLSSFLGNPGLCIRCSASDCLACSERSSLKSCDDKSTKRKGLSKVQTVKMFLGLSIFLGLSLLALVCVIVFGRTAKQENHISSEQGSSSLLNKVMEATENLNDRYIIGRGAHGIVYKVVIGPDKAFAMKKIRFTASQGKNSSMAREIQTLGKIRHRNLVKLEDFWLRKDCGLILYSYMANGSLHDVLHERVPTPTLKWNVRYKIAVGIAHGLAYLHYDCDPPIVHRDIKPSNILLDSDMLPHIADFGIAKLLEQSSPASNTSIAVPGTIGYIAPENAYATTSSRESDVYSYGVVLLELITRKKAVTDPSYEDGVLVDWVRSVWRETGQIHQIADSILSCEFADTHIMENLIKVLMVALRCTEKDPHERPTMRDVIHQLN* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1910 1072 Gene3D Phosphorylase Kinase; domain 1 764 870 - -
Vra5g1910 1072 Pfam Leucine rich repeat 92 152 IPR001611 GO:0005515
Vra5g1910 1072 Pfam Leucine rich repeat 168 224 IPR001611 GO:0005515
Vra5g1910 1072 SUPERFAMILY L domain-like 378 714 - -
Vra5g1910 1072 Gene3D Transferase(Phosphotransferase) domain 1 871 1072 - -
Vra5g1910 1072 ProSiteProfiles Leucine-rich repeat profile. 645 667 IPR001611 GO:0005515
Vra5g1910 1072 SMART serkin_6 794 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1910 1072 ProSiteProfiles Protein kinase domain profile. 794 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1910 1072 Gene3D Ribonuclease Inhibitor 231 370 IPR032675 -
Vra5g1910 1072 SUPERFAMILY RNI-like 73 442 - -
Vra5g1910 1072 Pfam Protein kinase domain 799 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1910 1072 Gene3D Ribonuclease Inhibitor 379 714 IPR032675 -
Vra5g1910 1072 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 90 1069 - -
Vra5g1910 1072 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 164 - -
Vra5g1910 1072 ProSitePatterns Protein kinases ATP-binding region signature. 800 822 IPR017441 GO:0005524
Vra5g1910 1072 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Vra5g1910 1072 SMART LRR_typ_2 522 546 IPR003591 -
Vra5g1910 1072 SMART LRR_typ_2 643 665 IPR003591 -
Vra5g1910 1072 SMART LRR_typ_2 115 139 IPR003591 -
Vra5g1910 1072 SMART LRR_typ_2 666 689 IPR003591 -
Vra5g1910 1072 SMART LRR_typ_2 188 210 IPR003591 -
Vra5g1910 1072 SMART LRR_typ_2 283 307 IPR003591 -
Vra5g1910 1072 SMART LRR_typ_2 163 187 IPR003591 -
Vra5g1910 1072 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 6 164 - -
Vra5g1910 1072 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 90 1069 - -
Vra5g1910 1072 Gene3D Ribonuclease Inhibitor 140 230 IPR032675 -
Vra5g1910 1072 Gene3D Ribonuclease Inhibitor 27 139 IPR032675 -
Vra5g1910 1072 Pfam Leucine Rich Repeat 524 546 IPR001611 GO:0005515
Vra5g1910 1072 Pfam Leucine Rich Repeat 237 259 IPR001611 GO:0005515
Vra5g1910 1072 SUPERFAMILY Protein kinase-like (PK-like) 779 1071 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1910 Vra-Chr5 24939351 24943093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1910 14 1071 Receptor kinase-like Gene Family AT1G73080 51.554 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra5g1910 Pkinase 3.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1910 - - gmx:100778035 1649.03