Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1907 ATGATGTTATTGAACGTTATCCAATTAGGTTTAGAAGAACTTACCCTAACTATATATCTTTCGCCATTGCAAAATTCTAATTCTGTTGCTATTTCCTCTCCATTTCTTTCTCATCAATTTGCAGCGTCGAATGGCGACATCGAAGCATGTTCAGAAAGCGAACCCATCTTGAATCACCACCATCTTCATTTGCAACCACCCGGAGAATCCTCCTTGTCCTGTGAAATTATTCCTATTGCTCCAAACCATGATGATGTCGACCATGATTTACCAAGTATTCGGGTTGATGAGAGTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCACCATGCCATTGCAAAGGTACGCAAAAGTACGTTCACAGATCATGTCTTGATAATTGGAGATCCACCAAGGAGGGCTTCGCCTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGGGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGATTGCTCTATGGCTTTTTCATAGCGATAATATGTGGCCAAAGAATTAATGAACGCCACTATCATGTTCTGGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAACGTGTAAAGAATGTGCCTGAACTTGATCCTAGTCACGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG 891 0.4074 MMLLNVIQLGLEELTLTIYLSPLQNSNSVAISSPFLSHQFAASNGDIEACSESEPILNHHHLHLQPPGESSLSCEIIPIAPNHDDVDHDLPSIRVDESCHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDRERVKNVPELDPSHVTELRMLGLY* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1907 296 SMART ringv_2 108 157 IPR011016 GO:0008270
Vra5g1907 296 CDD RING_CH-C4HC3_MARCH 109 157 - -
Vra5g1907 296 Pfam RING-variant domain 109 156 IPR011016 GO:0008270
Vra5g1907 296 ProSiteProfiles Zinc finger RING-CH-type profile. 101 163 IPR011016 GO:0008270
Vra5g1907 296 PANTHER OS02G0132300 PROTEIN 36 295 - -
Vra5g1907 296 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 36 295 - -
Vra5g1907 296 SUPERFAMILY RING/U-box 104 160 - -
Vra5g1907 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 161 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1907 Vra-Chr5 24923951 24927922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1907 69 255 C3H Transcription Factor Family AT1G50440 65.969 1.11e-87 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1907 - - vun:114185559 585.489