Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1902 ATGTTGGTTAAAATTCAAACAAATTGGTTTGTGCCTGTTGCAGTTCCATTCTCAGTCCCACACAAGCTCGAGGGTTGTTTTGTAATGAGTAAGTGCGTTTTATCCACGCATACTCCTATTCTATTTGAAGTCGATAATGATAAAGCAAGACGAAGAAGAAGAAGAAGATCAAATTGGAGTTGTGGTTGTGGTTCGGAGGAGGCACATGTACAGAGACAGGATTTCTCTGAATCTGAATCCAAACGGGAATTGGAAGTGCAGGAAGCTCGCAGGGCCATTTCAAGTTATCTCGGAGAATTGGGAGTGTCAGAGGAGGAATCGTTGTCCATCGCGTGGAATTGCCCGGGTTATGTGAATATGTTACTGGAAGGTGTGAGGGATTTGGATGAGTGGGGTTGGGAGACAGATGAAGAGATTGCGGGATTGAGCTTCAAGGACAAGATTCTTCGTGTTGCCGCTCAAAAAGGAGACAAGGGGAAAATTGCCTACTTAGAGACTCTTGGTCTCACTCTCTCTTGGTCTATCAACGTCGCCGGATATCTCTCCGCTCACACCCTCCCTTCTCTAATACACAAGGTTACGCGCATCAAGCAACTTTTCTTTTCTCCTCCCGATAACGACGGCGATAACGATAACGATCACCACCCCTCGTTGCTCGTGAGAAACATTCGCCTCACTATGCGCCACTTGTCCATTTCAATTGACGAAGACCTGCAACGCACTTTCTCCTTTTTCGAAAAGCTTCAAGCAAAGCCTGGTGGCCTAAACATCTTGGCTTCCCAAGATTCTGCGTTCTCTTCCTTAATCCAATCCTTCCCCCGTATGCTTCACTTATCCTTAGATAACCACTTAACACTCATACTGGATTCTCTCCTCAACTTTGGAATCCCCACATCTCGCATCTCACACATAATACTGGCTTTCCCTCCTCTTCTCTTCTGGAATCTTCAAATCCTGCAAACTAGACTCCTCGCCGTCAAGCAGATTAACGTTGCTGATCAAGATTATGCCAAGTTTCTGCTAAAATATCCTTGGTTTCTGTCGACAAGTATTCAAGAAAATTATGCGGAGCTCCTTGCTTTTTCGTATTCTATCAAGGTTCCAAAGACACAGATAGACCGTGCAATTGAAAGCCACCCTCATCTATTGAGCTGTTCAACTAGCAAGCTCGAGTTGATGGTAGATCAGTTTGCTAAACTTGGAGTTCGGAAGAAAAAGTTAAGTCAGGTTATTACTAGAAGTCCTCAATTGCTACTACGGAAGCCCAAAGACTTTCTACAGATTGTTCTGTTGTTTGAAAATATGGATTTAGATAAAGAAACTATTGGAAGAATACTTGCCCGCTGCCCTGAAATTTTTGCTTCCAGCATTAATAAAACTTTACAGAGGAAGATTGAGTTCCTTGGTAGGGTTGGCATTTGTAAGGCTTTCCTACCAGGGGTTATCAGAAAGTATCCTGAATTACTTGTATCTGACATTGACAAAACATTAATACTAAGGATAATGTACTTGATGAAGTTAGGTCTTTCAGAAGAAGAGATAGCATTTATGGTACGCACATTTTCTCCTCTTCTTGGGTACAGTATAGAGGGGGTTCTTAAGCCAAAAATAGAATTCCTGGTGAACTCAATGGAGAGGCCAGTAAGAGATGTGGTGAGTTACCCTCGGTATTTTAGCTATTCACTAGAGAAGAAAATAAAGCCAAGATATTGGGTGTTGAAAAGAAGGGATATCAAATGTAGCTTAAAGGATATGCTGGGAAAAAATGATGAAGAATTTGCCGCTGAGTTTATGGGTATTGGAAGGATGCCCGTCTCTCATCCCGTTTCTTCTAATGATAGCCTGTAA 1848 0.4253 MLVKIQTNWFVPVAVPFSVPHKLEGCFVMSKCVLSTHTPILFEVDNDKARRRRRRRSNWSCGCGSEEAHVQRQDFSESESKRELEVQEARRAISSYLGELGVSEEESLSIAWNCPGYVNMLLEGVRDLDEWGWETDEEIAGLSFKDKILRVAAQKGDKGKIAYLETLGLTLSWSINVAGYLSAHTLPSLIHKVTRIKQLFFSPPDNDGDNDNDHHPSLLVRNIRLTMRHLSISIDEDLQRTFSFFEKLQAKPGGLNILASQDSAFSSLIQSFPRMLHLSLDNHLTLILDSLLNFGIPTSRISHIILAFPPLLFWNLQILQTRLLAVKQINVADQDYAKFLLKYPWFLSTSIQENYAELLAFSYSIKVPKTQIDRAIESHPHLLSCSTSKLELMVDQFAKLGVRKKKLSQVITRSPQLLLRKPKDFLQIVLLFENMDLDKETIGRILARCPEIFASSINKTLQRKIEFLGRVGICKAFLPGVIRKYPELLVSDIDKTLILRIMYLMKLGLSEEEIAFMVRTFSPLLGYSIEGVLKPKIEFLVNSMERPVRDVVSYPRYFSYSLEKKIKPRYWVLKRRDIKCSLKDMLGKNDEEFAAEFMGIGRMPVSHPVSSNDSL* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1902 615 SMART mt_12 515 547 IPR003690 GO:0003690|GO:0006355
Vra5g1902 615 SMART mt_12 479 510 IPR003690 GO:0003690|GO:0006355
Vra5g1902 615 SMART mt_12 443 474 IPR003690 GO:0003690|GO:0006355
Vra5g1902 615 SMART mt_12 373 403 IPR003690 GO:0003690|GO:0006355
Vra5g1902 615 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Vra5g1902 615 SMART mt_12 548 579 IPR003690 GO:0003690|GO:0006355
Vra5g1902 615 SMART mt_12 337 368 IPR003690 GO:0003690|GO:0006355
Vra5g1902 615 SMART mt_12 302 332 IPR003690 GO:0003690|GO:0006355
Vra5g1902 615 SMART mt_12 408 438 IPR003690 GO:0003690|GO:0006355
Vra5g1902 615 Pfam mTERF 288 594 IPR003690 GO:0003690|GO:0006355
Vra5g1902 615 PANTHER CGI-12 PROTEIN-RELATED 137 608 IPR003690 GO:0003690|GO:0006355
Vra5g1902 615 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 137 608 - -
Vra5g1902 615 Gene3D Transcription termination factor 3, mitochondrial 392 601 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1902 Vra-Chr5 24865581 24870620 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra5g1902 mTERF 6.8e-91 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1902 K15032 - gmx:100802127 858.596