Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1901 ATGATAACACGGTATTCCATTTTTCCCCCACATTATTCGCTGCTGTACAAAATATTTCGTCAGATACACTGCCTTGATGTCCTACTTGAAGACAATGATGTTGTGAAAGCAATAACGGAATATGTCTCTTATGCTGCGATTGAAAACTTGGTGATTGGTGCAACATCCAGGCATGGGTTTATTCGATTTAAGTCATCATCATGTGCCTCAACTAGCATATCAAAGGGGGCGCCGGACTTTTGTACCGTGTTCATCATTTCAAAGGGAAAAATCTCGTCAGTTCGGAATGCTACTCGTCCAGCCGCGCATACATCTCCACTTCTGATCCATATACGTAATCTAAAGAACAAGGACGAAAATCAGCAAGAAATACCCTTCAGAAATACGAATACGAGAGACAGGACGCCATTCAAACCTCAGAACTGGCACGATGAATCTATTCAGTCTCCATTTCCAAGAGGAAGAGGCACGAATAGATTGTCATGCGTGGACTTCCCAGACTCAGATACGGAAATATCATTTGTAAGCTCCGATAGGCCAAGCAGTTGCCGTTCGTCCTCCGTTTATGACTATATTGACGCAAGCCGAACTCCGCGGGCTTCTACCAGTTCAGATCATAGCTGTGGATCAACCCGATTGGGACTCAAGTTCAATGACCTCGGTTCACCCGATACCTCATTCTCTCACGAAAGCAGTAGAACATCATTCTCATATTCATCACAGAGCATGGATGAAGAAGCAGCAGAAGCTGATATGAAGAGGCTGAAGCTTGAGTTAAAGCAAACGATGGATATGTACAGTAAAGCATGCAGAGAAGCACTAACAGCCCAGCATAAGTTAATGGAGTTGACACACTGGAGAATTGAGGAAGAAAAAAAATTGGAAGAGGCACGATTGGCTGAGGAAGCTGCGCTGGCAATTGCAGAGAAAGAGAAAGCAAGATGTAGAGCAGCCATGGAAACTGCTGAAGCATCGAAGAAAATTGCTGAGGTTGAAACACACAAAAGAGCGACTGTTGAAGTTAAAGCTCTTAAAGAAGCAGAGGAAATGAGGAAGCTTTTGGACAATCTAGCCCAAACTGATGTAAGATATAGGAGATACTGTATAGAGGAGATTGAAGCAGCCACGAACTTCTTTTCTGAATCCCAGAAAATCGGAGAAGGAGGTTATGGCCCTGTTTTTAAATGTTTCCTTGATCACACTCCAGTTGCTGTCAAGGTTCTACGTCCAGATGCTGCTCAAGGGAAGTCACAGTTTCAGCAAGAGGTTGACATTCTGAGCTGCATGCGACACCCAAACATGGTGCTTCTTCTGGGAGCATGTCCGGAGTATGGCATATTGATATATGAATATATGGCTAATGGAAGCCTAGAAGATTGCCTGTTTCGAAAAAGGAAGAACAAGGTTCTGTCTTGGCAGCTGAGGTTCCGAATTGCTGCAGAGATAACGACGGGCCTTCTATTCCTGCATCAGACCAAGCCTGAACCTTTAGTGCACCGTGATCTGAAACCAGGCAACATTTTGCTAGACCAGAATTATGTGAGTAAGATAAGCGATGTTGGATTAGCAAGGCTTGTCCCAGCAGTTGCTGAAGACGTGACACAATGCTGCATGACATCAGCAGCTGGAACATTTTGTTATATTGATCCTGAGTATCAGCAAACAGGAATGCTTGGGGTGAAGTCAGATGTTTATTCTCTAGGAATAATTTTTCTTCAACTATTGACTGGCAGACCTCCAATGGGTTTAGCTCACCATGCCGGGCAGGCTATAGAGAAAGAAACCTTTGAGGAAATGCTGGACCCATCTGTAACCGATTGGCCTCTTCAACAAGCCTTGTGCCTTGCAAACATAGCAGTCAAGTGTGCGGAACTTAGGCGAAAAGATAGGCCAGACCTTGCCAATGTGGTGTTGCCAGAGCTCGATAAATTGAGAGAATTTGCAGAAGAAAACATGACACTGCGATTGTTTCCCATCAATTTAGGATGCACTGCTCCCTCTCCCTGCCACAGTGAAATTTCTGTGCAACAGGATGTGATAAGCGACCCGCGCCTTGTACATTCCGTAGGCTCATCAGCTCCATCAACTCCTACAGAAGAAAAACATTAA 2109 0.4448 MITRYSIFPPHYSLLYKIFRQIHCLDVLLEDNDVVKAITEYVSYAAIENLVIGATSRHGFIRFKSSSCASTSISKGAPDFCTVFIISKGKISSVRNATRPAAHTSPLLIHIRNLKNKDENQQEIPFRNTNTRDRTPFKPQNWHDESIQSPFPRGRGTNRLSCVDFPDSDTEISFVSSDRPSSCRSSSVYDYIDASRTPRASTSSDHSCGSTRLGLKFNDLGSPDTSFSHESSRTSFSYSSQSMDEEAAEADMKRLKLELKQTMDMYSKACREALTAQHKLMELTHWRIEEEKKLEEARLAEEAALAIAEKEKARCRAAMETAEASKKIAEVETHKRATVEVKALKEAEEMRKLLDNLAQTDVRYRRYCIEEIEAATNFFSESQKIGEGGYGPVFKCFLDHTPVAVKVLRPDAAQGKSQFQQEVDILSCMRHPNMVLLLGACPEYGILIYEYMANGSLEDCLFRKRKNKVLSWQLRFRIAAEITTGLLFLHQTKPEPLVHRDLKPGNILLDQNYVSKISDVGLARLVPAVAEDVTQCCMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRPPMGLAHHAGQAIEKETFEEMLDPSVTDWPLQQALCLANIAVKCAELRRKDRPDLANVVLPELDKLREFAEENMTLRLFPINLGCTAPSPCHSEISVQQDVISDPRLVHSVGSSAPSTPTEEKH* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1901 702 PANTHER OS02G0152300 PROTEIN 19 684 - -
Vra5g1901 702 Pfam Protein kinase domain 380 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1901 702 MobiDBLite consensus disorder prediction 224 243 - -
Vra5g1901 702 PANTHER BNAA05G18880D PROTEIN 19 684 - -
Vra5g1901 702 SUPERFAMILY Protein kinase-like (PK-like) 363 637 IPR011009 -
Vra5g1901 702 MobiDBLite consensus disorder prediction 129 153 - -
Vra5g1901 702 Gene3D Transferase(Phosphotransferase) domain 1 452 656 - -
Vra5g1901 702 Coils Coil 245 272 - -
Vra5g1901 702 Gene3D Phosphorylase Kinase; domain 1 357 451 - -
Vra5g1901 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Vra5g1901 702 Coils Coil 291 325 - -
Vra5g1901 702 ProSiteProfiles Protein kinase domain profile. 379 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1901 702 SMART serkin_6 379 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1901 Vra-Chr5 24859476 24863571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1901 20 675 Receptor kinase-like Gene Family AT1G78940 59.016 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra5g1901 Pkinase 3.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1901 - - gmx:100801601 1036.94