Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1900 ATGGGGGCGCGCTCTGCTTCGGTGGTGCGCGCACCATTCATGAATGTGAAGCTGACGCTGTGGTTGAGCTTGGTTAAGGGTAACGTAATTGTGTTGGTATTGGCATCAATATTAATATCATCAAGCTGGTGCACATCAGCGAAAGCCATGTATTCTGATGCGGAGGCGCTGATGAAGTTCAAGAAGTCGTTGACAAACACAGTGGCCTTGGAAAGTTGGGATTCAACCACAAACTCAAAGCCACCTTGCTCTGGAAACATTCCAAACTGGGTCGGGTTGTTTTGTTTGAGGGACAAGGTTTGGGGGTTGCGACTCGAGAACATGGGCCTAACAGGCACAATCGATATAATGACTCTCGCTTCCATCCCCGCTCTCCGCTCTGTTAGCCTGATGAACAACACCTTTGTGGGTCCCTTGCCTAGCGTAAGGTTGCTGCCAAATCTCAAGGCCCTCTACCTCTCCTACAATCATTTCTCAGGACAGATTCCCGACGATGAATTTAAGGGTTTGCATAAATTGAGGAAACTTTATTTGTCCAATAATGAGTTCACAGGTCAAATTCCTTCCTCCATTGCCACCTTGCCTTCTCTCCTCATCCTCCGTCTCGACTCAAACAAGTTTCAAGGTCAAATCCCCCTCTTCCAGCACTTTAATACTACTAGTTTCATCAACTTTTCTAACAATCAGTTGGAGGGTCCCATTCCGCCCAGTCTAATCACCTTCGGCGCCTCCCCATTTAGCGGTAACCCTGGACTATGCGGGGCGCCCCTCAAGAATGTGTGCCAAGAGGTAGCCACACCGTCCAAAATGCGTCTTCTAAAAATTTTACTAGCTATTGTCACGAGTGCATTGATTCTAGCCATCCTGGTTATAGTATTGGTGATATATCGGTTGAGGTCACTGACATCCCAACTGCAACAACAATCTTCAGCAGAAGATCATATGGCCTCAACGTTGCAGGGCCAGGGCCAGGTCCAGGTCCAGGTTCCTCCCATTTATGTCAAAACTAAAAGCCTAGCGGATCACTACGATGCTAGTCCCAGGCAAGCGTCATCATTTCAGGGTGTTGGACGTGCACGTTCCAGGAGGGTGGAACCAGGCAAACTCATATTCCTCAGGCCTCAAGAACCTATGTTTGATTTGCAGGATTTGCTAAGGTCCTCCGCTGAAATTCTTGGAAGTGCAGGATTTGGCTCCTCCTACAAGGCCGTCATTTTAGACGGTTACCCCGTTGTTGTCAAGAGGTACAAGCATATGAACAATTTGCCCAGAGAGGAGTTCCACGAGCACATGCGAAGACTAGCCAATCTCAACCATCCCAATCTTCTCCCTCTCCTCGCCTATTATTATAAAAAGGAAGAAAAGCTTCTCCTCTCTGCTTTTGTTCACAATGGTTGCTTGGCCAGTCATCTTCATGGCAATCATAACTCTCAAAAGCTTGGACTTGACTGGCCAACTCGTTTGAAAATCGTGAAAGGTATAGCCAGGGGTTTGGCTTACCTATACAGTGCACTCCCAAGCGTAATTGTGCCTCATGGTCATCTCAAATCTTCCAACGTCCTTTTGGATGAATCCTTCGAGCCCCTGCTCACTGATTATGCCCTCAGCCCCGTCATCAACCTTGACCATGCCCAAAAAGTTATCTTGCCTTACAAATCTCCAGAATATGCTCAACTTGGGCGCATTACAAAGAAGACTGATGTGTGGAGTTTTGGAATTCTGATTCTGGAGATCTTGACCGGCAAATTCCCTGAGAACTATCTCACACTTAGGCATAATACTGATTCTGACATAGCCAGTTGGGTCAATACCATGATTACTGAGAAACGCACCAGTGACATGTTTGACGTAGAGATGGGAGGAATTGGAAATTGTAAAGCTGAATTACTCAAACTCCTGAAGATTGGCTTGAGTTGTTGTGAGGAGAATGTGGAAAGAAGGCTTGATATCAAGGAAGCTCTTGAGCAAATTGAAGAGTTGAAAGAGAGCGAAAATGATGCTATTAATGGAGAATACTCCTCCAATCTCATGACCACAGAAAGAAATACTTATAGAGCTGTCTAA 2064 0.4622 MGARSASVVRAPFMNVKLTLWLSLVKGNVIVLVLASILISSSWCTSAKAMYSDAEALMKFKKSLTNTVALESWDSTTNSKPPCSGNIPNWVGLFCLRDKVWGLRLENMGLTGTIDIMTLASIPALRSVSLMNNTFVGPLPSVRLLPNLKALYLSYNHFSGQIPDDEFKGLHKLRKLYLSNNEFTGQIPSSIATLPSLLILRLDSNKFQGQIPLFQHFNTTSFINFSNNQLEGPIPPSLITFGASPFSGNPGLCGAPLKNVCQEVATPSKMRLLKILLAIVTSALILAILVIVLVIYRLRSLTSQLQQQSSAEDHMASTLQGQGQVQVQVPPIYVKTKSLADHYDASPRQASSFQGVGRARSRRVEPGKLIFLRPQEPMFDLQDLLRSSAEILGSAGFGSSYKAVILDGYPVVVKRYKHMNNLPREEFHEHMRRLANLNHPNLLPLLAYYYKKEEKLLLSAFVHNGCLASHLHGNHNSQKLGLDWPTRLKIVKGIARGLAYLYSALPSVIVPHGHLKSSNVLLDESFEPLLTDYALSPVINLDHAQKVILPYKSPEYAQLGRITKKTDVWSFGILILEILTGKFPENYLTLRHNTDSDIASWVNTMITEKRTSDMFDVEMGGIGNCKAELLKLLKIGLSCCEENVERRLDIKEALEQIEELKESENDAINGEYSSNLMTTERNTYRAV* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1900 687 Gene3D Transferase(Phosphotransferase) domain 1 462 683 - -
Vra5g1900 687 Pfam Leucine rich repeat 146 207 IPR001611 GO:0005515
Vra5g1900 687 Gene3D Ribonuclease Inhibitor 144 263 IPR032675 -
Vra5g1900 687 Coils Coil 643 670 - -
Vra5g1900 687 Pfam Protein tyrosine and serine/threonine kinase 390 655 IPR001245 GO:0004672|GO:0006468
Vra5g1900 687 Gene3D Ribonuclease Inhibitor 46 143 IPR032675 -
Vra5g1900 687 Pfam Leucine rich repeat N-terminal domain 52 95 IPR013210 -
Vra5g1900 687 Gene3D Phosphorylase Kinase; domain 1 368 461 - -
Vra5g1900 687 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 25 670 - -
Vra5g1900 687 SUPERFAMILY L domain-like 53 256 - -
Vra5g1900 687 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 25 670 - -
Vra5g1900 687 ProSiteProfiles Protein kinase domain profile. 386 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1900 687 SUPERFAMILY Protein kinase-like (PK-like) 389 661 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1900 Vra-Chr5 24853827 24856576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1900 52 666 Receptor kinase-like Gene Family AT5G35390 48.265 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra5g1900 PK_Tyr_Ser-Thr 2.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1900 - - pvu:PHAVU_005G185800g 1075.08