Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1898 ATGCCAAATTTAGGTGTTTTTCCAAATATGGACGCTGAATTTCTTAGAGCACGATCTCTTACGCTTGAAAGAATATGTAACAAATTACTGCTTAAGTACCAGCATCCTGTTACAGAAGCACATAAAAGGAAGGTTAAGGATCTTGCAAAACGTCTCGAGGAGGGCCTGTTAAAAGCTGCTATATCTAAGGAGGACTACATGAACTTAGACACACTAGACAGTCGCTTATCTAATTTCCTTAGAATGTCATCTATGACTACTAACCACCAACAACATCCTCAGCTTGTTAGCTCTTCTCCAATTGCTACAATGATACCAACACCTGGCATGTCACATATTACAAATTCCACCATGATCACGACATCTTCTGTGGATACGACAATGATTGCTGCCAGTGGATCTAACAGCATAGCATCGCCATCTGTCAATAGTGTAAACATGTTACCAGCAGGTGGCATGCTTGGCAGCACCTTAAATAGATCTGATGGTTTGTCTAATGGTTACAAGCACTCTGCTACAAGTTTTTCCATTGGTTCAGGAGGAAATATGTCATCCGTTGGGGTGCAAAGAGTCACTAGTCAGATGATTCCAACTCCAGGATTTAGTGTCAGCAATAATCATTCATATACAAATATGGATCCTTCGAGTAACAACTGTTCTTTTTCCGGTGTTGATTCTACATTACTATTGCCATCACAGTCTCAGCCACAGCGGCACCAGAAGCTGCAAGATAGTGACCACAACAATCATGCATTGCACAACCTTGGCAGTCAAATTGATGGTGGAAGGAGATCTGATTTACTGCAAAACACATTTGCATATCCAAATGGTTCTATCAATAGTGGGCTAGGTTTGATTGGAAACAGCATACAAATTGCAAATGAACTCGGGACTGAAGACTACACTTCAGCATACTCTAATTCCCCTAAGAACTTACAGCAGCTATTTGATCAAAATCAACAACCAGTAGTGCAGGGTGACAAATATGGATTGATTAATGTTGACACTTTTAATTCTGGAAGCTTTTATGCATCTGCAACATCCTCTGGCTCTATGTTGAACACTCAGAGCATGAATGCTGTAAAATTGCCCTCAATCCCCATTTCTAGCTCACTCATAAGTGGTCATTCGAATTTGCACAGTATGAATCATACTGCTCATCACAACTCTCAAGCAATAAGTTCATTAAAAAATTTAAAATTCCAGTCTTCCCTGACTTCAAGAAATGACCGTTTAAATACTCAACATCAATATGAGCAAAGAACCCAACAATGTCACCAGTCAGATTGGTATGCTCCACAGCAATTTCAGCTGAATCAGCAAAGTCAGCAACCTCAGCATTTGGTCAACAATGATGCCTTCCCTCAGTCTCAACTCTCTTCCGGTCTAGACAATAACATAAAGTCTGAGCCTGGTGTTGAACCACATAAAGAAATTTTCACTTCTCAGCTTTCTGAGCAGTTCCATACACCTGAAATGCACAACCATTTCCAACAGATTCCTTCTAAAGACTGCTCTAAGGTTGCTCAGCAGCAGGTTTCATTGGATCAGCACAACTCATCCTCATCACCACCTCAAATTTCTCAACAAATGTTGCATCCTTATCAACTGGTTTCAGAGTCTCAAAATAATTTTAACTGCCTTTCAGTTGGGTCACAATCTAAATCCATACTTAAAAATCAGTGGCCTCGACCACAAGATGAAAATGATGTTCCTAAGGGTATGTTACATGAACAACATCTTCCCATTGATTTTCATCAAAGAATACCAAGGCAAGATGAAACCCAATGCTGTAATTTACCATTAGATGGATCTATTATTGGTCAAGCTGTTGCCTCTAGAAGCTCAGTTGAGCTGCTAGACCCAATCAATTCTAAAGAGAAGGAACACAGAAACCAACAAAAGTGGCTTTTATTTTTGTTTCATGCTCGATGCTGTTCTGCCCCAGAAGGGCGATGCCAAGAACGCCATTGTTCTATTATGCAGAAGTTATGTAATCATGTAGATAGATGCATTATATCTCATTGTCCATATCCTCGTTGTGGTCGTACCAGGAAATTGCTTCATCATTACATAAAATGCAGGAATCCACATTGCCCTGTTTGCATTTTAGTAAGGAAGTATAGACATGCATTTCAACTTAAGTCCCGAATTCAGTCAGATCTTGAACCATGTTTGCCAGTTGCTTTAAATGTATCCAGCGAAACCTTTAATGCAGCGGGCCTTTCATCTAGATTGATCTCCAAGTCTCAACTAGTGGTTGAAATTTCAGAAGACCTACCAGCTCCAAAGCGTATGAAAACTGAGCAATATACCCAGTCCACTAATCCTGAATATGATAGCGCTGCCTCATCTGCTCTTCCAAACTGTGAATTACGAGATTCAAAGGATACTCAATGCCAGTCCTACTCATGTGGGGATATGTCTATATCAATTAAATCTGAGCTTAATGAAGTTAAAGCAGAAGTTCTGGCACATTCAATGCATGAAAATCTCAGCGAGACAAGAATGGAGGAGGATAATGCACATGACAAAAGGCCCACTGCTAAGCCTGTCACATACAATGAGCCTGCTAATATAGCTAGGCTGGAGAATATTAGAACTGAGAAAGAAAGTGGTCAAGATAAGCAAGAAAATGTGACCCAGCCATCTGAACCTGGAGCTGCAACCAAGTCTGGTAAGCCAAAAATAAAGGGAGTCTCATTGACAGAGCTGTTTACTCCTGAGCAAGTCAGGGAACATATCACTGGCCTCAGGCAATGGGTTGGCCAAAGCAAATCAAAGGCAGAGAAGAATCAAGCAATGGAGCATTCGATGAGTGAGAACTCCTGTCAGTTGTGTGCAGTAGAGAAATTAACTTTTGAACCACCCCCTATTTATTGCACAACATGTGGTGTTCGGATTAAACGCAATAATATGTATTATACAATGGGTACTGGTGATACACGACACTATTTTTGTATACCATGCTACAATGAGCCTCGTGGAGACACCATTGTTGTTGATGGAACTTCTTTTCCTAAGTCAAGGTTAGAAAAGAAGAAAAATGATGAGGAAACAGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCATGGCAACATCAAATTTGTGCCTTATTTAATGGTCGAAGAAATGATGGTGGACAAGCTGAATATACATGCCCTAACTGCTATATTCAAGAAGTAGAAAGAGGTGAGCGCAAGCCCTTACCCCAAAATGCTGTTCTTGGAGCCAAGGATTTACCCAGAACAATTCTCAGTGACCAAATAGAGCAACGATTATTTAGGAGACTAAAGCTTGAGAGACAAGAGAGGGCCCGACTTCAAGGGAAAAATTATGATGAGGTGCCTGGAGCTGAATCTCTTGTCATAAGGGTTGTGTCCTCTGTTGACAAGAAGTTAGAAGTTAAACAGCGGTTTTTGGAGATTTTTCAGGAAGAAAATTACCCAACAGAATTCCCATATAAATCAAAGGTAGTTTTGTTGTTTCAGAAGATTGAAGGGGTGGAAGTATGCCTCTTTGGCATGTATGTTCAAGAGTTTGGATCTGAAAGTAAATTTCCAAATCAGCGCCGGGTTTATCTTTCATATCTGGACTCTGTTAAGTATTTTAGGCCCGAGGTTAAAGCAGTGACTGGAGAAGCTCTTCGAACATTTGTTTATCATGAAATTCTGATTGGATACCTTGAGTATTGCAAGAAACGTGGTTTCACTAGCTGCTACATTTGGGCTTGTCCGCCACTAAAGGGTGAAGATTATATTTTATATTGTCATCCAGAAATTCAGAAAACACCAAAATCTGATAAGCTTAGGGAATGGTACCTTGCTATGTTAAGAAAAGCTGCCAAGGAGAATATTGTGGTTGATCTCACCAACTTGTACGACCATTTCTTTGTATCTTCTGGTGAATGTAGGGCGAAGGTTACAGCTGCAAGGCTCCCATATTTTGATGGTGACTATTGGCCTGGGGCGGCCGAGGATTTGATTCATCAGCTTCGCCAAGAGGAAGATGGAAGAAAACAAAATAAGAAAGGAACAACTAAGAAGACTATAACAAAAAGGGCTTTAAAAGCATCTGGTCAGTCAGATCTTTCTGGAAATGCCACAAAGGATCTTCTCCTGATGCACAAACTTGGCGAAACCATTTCCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCAGTCATTGTTGTATTCTGATGGTGTCAGGCAACCGTTGGGTTTGCAGGCAATGCAAGAATTTTCAGATTTGTGACAAGTGTTATGAAGCAGAACTAAAGCGTGAAGAAAGAGAGCGGCATCCTATCAACCAGAGGGAGAAACACATCCTTTATCCTGTGGAAATTATTGATGTACCTGTCGATACAAAGGACAAAGATGAGATTCTTGAGAGTGAGTTCTTTGACACTAGGCAGGCATTTCTGAGTCTCTGTCAGGGAAATCATTATCAGTATGATACTCTAAGGCGGGCCAAGCATTCCTCTATGATGGTTCTCTATCATCTTCATAATCCAACTGCTCCTGCATTTGTTACTACATGTAATATTTGCCGTCTTGACATAGAAACAGGCCAAGGTTGGCGTTGTGAAGTCTGCCCTGAATATGATGTGTGCAATGCTTGCTATCAAAAGGATGGTGGCACTGATCATCCTCATAAATTGACAAATCATCCATCAATGGCAGATCGTGATGCTCAGAACAAGGAAGCTAGGCAACAACGAGTATTACAGTTACGAAGAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCCCATTGCCAATATCCAAATTGTCGGAAGGTGAAGGGGCTTTTCCGTCATGGGATGCATTGCAAAACACGTGCCTCTGGAGGTTGCGTTCTATGTAAGAAAATGTGGTATTTGCTTCAACTCCATGCTCGTGCCTGCAAAGAATCTGAATGCCATGTACCACGTTGCAGAGATTTAAAAGAACACTTGAGGAGGTTGCAGCAACAGTCTGATTCACGGCGAAGAGCAGCTGTAATGGAGATGATGAGGCAGAGAGCTGCAGAAGTTGCAAACAGTTCTGGATGA 5079 0.4103 MPNLGVFPNMDAEFLRARSLTLERICNKLLLKYQHPVTEAHKRKVKDLAKRLEEGLLKAAISKEDYMNLDTLDSRLSNFLRMSSMTTNHQQHPQLVSSSPIATMIPTPGMSHITNSTMITTSSVDTTMIAASGSNSIASPSVNSVNMLPAGGMLGSTLNRSDGLSNGYKHSATSFSIGSGGNMSSVGVQRVTSQMIPTPGFSVSNNHSYTNMDPSSNNCSFSGVDSTLLLPSQSQPQRHQKLQDSDHNNHALHNLGSQIDGGRRSDLLQNTFAYPNGSINSGLGLIGNSIQIANELGTEDYTSAYSNSPKNLQQLFDQNQQPVVQGDKYGLINVDTFNSGSFYASATSSGSMLNTQSMNAVKLPSIPISSSLISGHSNLHSMNHTAHHNSQAISSLKNLKFQSSLTSRNDRLNTQHQYEQRTQQCHQSDWYAPQQFQLNQQSQQPQHLVNNDAFPQSQLSSGLDNNIKSEPGVEPHKEIFTSQLSEQFHTPEMHNHFQQIPSKDCSKVAQQQVSLDQHNSSSSPPQISQQMLHPYQLVSESQNNFNCLSVGSQSKSILKNQWPRPQDENDVPKGMLHEQHLPIDFHQRIPRQDETQCCNLPLDGSIIGQAVASRSSVELLDPINSKEKEHRNQQKWLLFLFHARCCSAPEGRCQERHCSIMQKLCNHVDRCIISHCPYPRCGRTRKLLHHYIKCRNPHCPVCILVRKYRHAFQLKSRIQSDLEPCLPVALNVSSETFNAAGLSSRLISKSQLVVEISEDLPAPKRMKTEQYTQSTNPEYDSAASSALPNCELRDSKDTQCQSYSCGDMSISIKSELNEVKAEVLAHSMHENLSETRMEEDNAHDKRPTAKPVTYNEPANIARLENIRTEKESGQDKQENVTQPSEPGAATKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKSKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNEPRGDTIVVDGTSFPKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLPQNAVLGAKDLPRTILSDQIEQRLFRRLKLERQERARLQGKNYDEVPGAESLVIRVVSSVDKKLEVKQRFLEIFQEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSESKFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLAMLRKAAKENIVVDLTNLYDHFFVSSGECRAKVTAARLPYFDGDYWPGAAEDLIHQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNATKDLLLMHKLGETISPMKEDFIMVHLQHACSHCCILMVSGNRWVCRQCKNFQICDKCYEAELKREERERHPINQREKHILYPVEIIDVPVDTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICRLDIETGQGWRCEVCPEYDVCNACYQKDGGTDHPHKLTNHPSMADRDAQNKEARQQRVLQLRRMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANSSG* 1693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1898 1692 Pfam PHD-finger 1017 1059 IPR019787 -
Vra5g1898 1692 SUPERFAMILY TAZ domain 1576 1659 IPR035898 -
Vra5g1898 1692 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1076 1512 IPR031162 GO:0004402
Vra5g1898 1692 MobiDBLite consensus disorder prediction 496 528 - -
Vra5g1898 1692 SUPERFAMILY RING/U-box 1374 1451 - -
Vra5g1898 1692 PANTHER HISTONE ACETYLTRANSFERASE HAC12 90 1691 - -
Vra5g1898 1692 Gene3D - 1513 1565 IPR043145 -
Vra5g1898 1692 PANTHER CBP/P300-RELATED 90 1691 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vra5g1898 1692 ProSitePatterns Zinc finger PHD-type signature. 987 1058 IPR019786 -
Vra5g1898 1692 SMART TAZ_2 1577 1655 IPR000197 -
Vra5g1898 1692 SMART TAZ_2 627 705 IPR000197 -
Vra5g1898 1692 SMART zz_5 1393 1437 IPR000433 GO:0008270
Vra5g1898 1692 SMART zz_5 1513 1559 IPR000433 GO:0008270
Vra5g1898 1692 Gene3D TAZ domain 621 710 IPR035898 -
Vra5g1898 1692 Gene3D TAZ domain 1571 1688 IPR035898 -
Vra5g1898 1692 Pfam Histone acetylation protein 1116 1338 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vra5g1898 1692 SUPERFAMILY RING/U-box 1495 1563 - -
Vra5g1898 1692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1011 1059 IPR013083 -
Vra5g1898 1692 Gene3D - 1390 1447 IPR043145 -
Vra5g1898 1692 MobiDBLite consensus disorder prediction 832 895 - -
Vra5g1898 1692 ProSiteProfiles Zinc finger TAZ-type profile. 625 705 IPR000197 -
Vra5g1898 1692 MobiDBLite consensus disorder prediction 1334 1364 - -
Vra5g1898 1692 Pfam Zinc finger, ZZ type 1516 1557 IPR000433 GO:0008270
Vra5g1898 1692 SUPERFAMILY FYVE/PHD zinc finger 1020 1060 IPR011011 -
Vra5g1898 1692 ProSiteProfiles Zinc finger ZZ-type profile. 1394 1457 IPR000433 GO:0008270
Vra5g1898 1692 Pfam TAZ zinc finger 634 702 IPR000197 -
Vra5g1898 1692 Pfam TAZ zinc finger 1584 1654 IPR000197 -
Vra5g1898 1692 ProSiteProfiles Zinc finger ZZ-type profile. 1514 1567 IPR000433 GO:0008270
Vra5g1898 1692 SMART KAT11_2 1109 1406 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vra5g1898 1692 MobiDBLite consensus disorder prediction 233 262 - -
Vra5g1898 1692 ProSitePatterns Zinc finger ZZ-type signature. 1519 1546 IPR000433 GO:0008270
Vra5g1898 1692 ProSiteProfiles Zinc finger TAZ-type profile. 1574 1657 IPR000197 -
Vra5g1898 1692 CDD PHD_HAC_like 986 1058 - -
Vra5g1898 1692 MobiDBLite consensus disorder prediction 832 850 - -
Vra5g1898 1692 SUPERFAMILY TAZ domain 626 708 IPR035898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1898 Vra-Chr5 24821045 24840432 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vra5g1898 HAT_KAT11 9.5e-32 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1898 K04498 - gmx:100800511 2870.88