Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1892 ATGGAATATGGAGGGTTCTCAGATATTTTTGCCCCAGAAACGGAGTTTATGGATGAGCTATTTGCAGAAGGATGCTGGGTGGAAACAAGGGTTGGATGTGGCACGGAGGCTTCAAAGTGGAACAGGAGCATGGAGTCGAATGGGGCGCACATAATATTTGAGGAAGAATCAGAGGCAGAAAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCAAGGGGGAATCCGGGGCCATCTTCGTCTGTGAAGGAGAGATTAGTGGTTGCGGTTGGGTACTTGAAAGAATACGCCAAGAACTCCAATATGGTGATTCAGGTATGGGTCCCCGCCCGGAGAGGATGTGAAGTAGGGATTCATCACCATCAGGATTTCCCATACACCCTCGACTATATTAGCAATGGGGATGCAACAAGATCCTTTCAGTTTCACGAGGAGTGGCTTTCTGATCACTGGCCTCCCAACATTCGCTTCCTCAGAACTCATGACTACCCCCGCCTTCACCACTACGATCTACGTCCTGGATCTCTCGCCATTCCCGTCTTTCAGAGAGGCACTGGAATTTGTCTCGGTGTTGTCGACATTCTCATGCCCAACAACGTAAACCCGGACCTTCACAACCTTCAGGATGTTGATTTTAGGAGCCCTTCTCTTCAGAACTTCATTCCATCAGCCATGACCGGTTTTGATGAGTTATACCAAGGTGCATTGAATGAGATAGTACAAGTGTTGACATGTGTGTGCAAGGCGCATGAGTTGCCTTTAGCTCTGACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGCGGGCATTCTAACGATGAGAATTATGTGTCGACTGTTGATCCAGCAAGCTTTGTGGCAGATGTAGATGTATTGGGATTCCTGGAAGCCTGCTCTGAGTACCACCTTTTGGGGGGTCAAGGAGTGGTTGGAACAGCCTTCACAACCTCCAAGCCTTGCTTTGCAAATGACATCACTGCCTTCACCAAGGCTGAATATCCTCTCGCACACCATGCAAACATGTTCGGCTTGCATGCCGCCGTGGCCATTCCTCTCCGGAGTGTCTCCTCTGATTTTGTCCTCGAGTTTTTCCTCCCAAAGGATTGCCATGACACCCAAGACCAGAAGCAGATACTCAACTCCTTGTCTATGCTGGTGCAGCAAGCTTGCCGGAGTTTGCACGTTGTACTGGACAAGGAGGAGGAGGAGGAATTGGTGTCACACCATCATCATCATCATAGCAAAGAAATGGAATCATCATCATGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTGTCCGTGTCTCTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAGGTGACAACCAACTGCAATGAACAGGTATTCTCGGACTTGGAAGGAACAGGCGGTGCTGGTGTCGGTGGCCGCCGGGGTGGCAGGAAATCAGGCGACAAGAGGCGAACCAAGGCAGAGAAGACAATCAGTTTGCCGGTTCTAAGACAATACTTTGCAGGAAGCCTAAAAGACGCTGCCAAGAGCATTGGGGTATGTCCTACCACTTTAAAAAGAATATGCAGACAACATGGGATTACGAGGTGGCCTTCAAGGAAAATTAAAAAGGTGGGGCACTCCTTAAGGAAACTTCAACTTGTGATCGACTCTGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTACACCAGTTTTCCAGAGTTGAGTGCCAATGGTGTTTCCGAATCACCCAAGATAAACAGTGATAATTCCAAGTTTTATTCCGAAAATGGGTTGTTTAGTAACCAAGGAGTTACTTCCACTTCGTCTTGCAGTCAGAGTTGTAACCCGAGTTTGAACCAATCAACCACTCTTATCAACAGCAACAATAATAACAATCCTGAGATTATTCTGATGTCAGATAAGCAATCAGGCGCATCAATGCAAGTCCACCATCCTCCTATTCCCATTTCCATTCCCATTCCCATTCAAAGCCTGGATGCTCTACCTCCCCTGCCCCAAACCAGCAGTGTCTGGAACACGGACGGTGGTACTTTCAGGGTGAAAGCTACTTTTGGAGATGAAAAAATCCGTTTTAGCTTGCAACCAAATTGCGGATTCAGAGATTTGCAGATGGAAATTGCAAGACGTTTCAATCTGAAGGAGATGAGCAAAATTCAGGTGAAGTATTTGGACGATGCTCAAGAGTGGGTTCTTTTAACATGCGATGCAGATCTTGAGGAGTGTAAAGACATAAATAGATCATCTCAGAGCCGCACAGTTAGACTATTCCTCTTTCATGCTTCGCCACTAAATCATTCAACTAATGCATTTGGCAGCACCAGCCCCACTTAA 2352 0.4745 MEYGGFSDIFAPETEFMDELFAEGCWVETRVGCGTEASKWNRSMESNGAHIIFEEESEAESLMVGKRWWIGPRGNPGPSSSVKERLVVAVGYLKEYAKNSNMVIQVWVPARRGCEVGIHHHQDFPYTLDYISNGDATRSFQFHEEWLSDHWPPNIRFLRTHDYPRLHHYDLRPGSLAIPVFQRGTGICLGVVDILMPNNVNPDLHNLQDVDFRSPSLQNFIPSAMTGFDELYQGALNEIVQVLTCVCKAHELPLALTWAPCIQQGKSGCGHSNDENYVSTVDPASFVADVDVLGFLEACSEYHLLGGQGVVGTAFTTSKPCFANDITAFTKAEYPLAHHANMFGLHAAVAIPLRSVSSDFVLEFFLPKDCHDTQDQKQILNSLSMLVQQACRSLHVVLDKEEEEELVSHHHHHHSKEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCNEQVFSDLEGTGGAGVGGRRGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSANGVSESPKINSDNSKFYSENGLFSNQGVTSTSSCSQSCNPSLNQSTTLINSNNNNNPEIILMSDKQSGASMQVHHPPIPISIPIPIQSLDALPPLPQTSSVWNTDGGTFRVKATFGDEKIRFSLQPNCGFRDLQMEIARRFNLKEMSKIQVKYLDDAQEWVLLTCDADLEECKDINRSSQSRTVRLFLFHASPLNHSTNAFGSTSPT* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1892 783 CDD PB1_NLP 685 766 IPR034891 -
Vra5g1892 783 PANTHER PROTEIN NLP2 18 779 - -
Vra5g1892 783 SMART PB1_new 684 767 IPR000270 GO:0005515
Vra5g1892 783 MobiDBLite consensus disorder prediction 468 490 - -
Vra5g1892 783 Gene3D - 685 767 - -
Vra5g1892 783 SUPERFAMILY CAD & PB1 domains 674 769 - -
Vra5g1892 783 Pfam RWP-RK domain 494 541 IPR003035 -
Vra5g1892 783 ProSiteProfiles PB1 domain profile. 684 767 IPR000270 GO:0005515
Vra5g1892 783 PANTHER PROTEIN NLP8 18 779 IPR045012 GO:0003700
Vra5g1892 783 Pfam PB1 domain 684 766 IPR000270 GO:0005515
Vra5g1892 783 ProSiteProfiles RWP-RK domain profile. 480 561 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1892 Vra-Chr5 24677902 24680551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1892 44 779 NLP Transcription Factor Family AT4G35270 42.124 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vra5g1892 PB1 4.7e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1892 - - pvu:PHAVU_009G115800g 1251.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1892 5 24677902 24680551 Vra5g1892 5 24677902 24680551 ECH