Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1891 ATGATTGTTAACATCGACCGGTCGTGTCTGCATGACTGTGGAAGTCACTACGACGTTGCAAACCAGGATGCCGGGAAAGAGGTAACGGATGTCGGCCGACCGGTTAAACCCGAGATGGGTGTTAGGGAGCAAGAGAGACTCGTTACTCTTGAAGGCTCGCTGCTGCAGGTCGAAGGCTCGCTTCCGCCGTGGAAAGCTCACCGCCGTCGAAGACTCGCCGCGCCAGTGTGTAGGAAGATGGAGAGAATGGATGATCTTCGCAACGCTTTACTAGAATTCCTCATTCGGAGCCCATTCCGGGACACTGAGGAAAAAGAGAGCATGGTGAAACATATGCTCCAAGTCTACTCCAAGTCTGATAATGATTCCGGTTTCAAGAAGACGTTTCTTCTGAAGATCATTCAAAATGACCTCCTCTCTTCTCACTCCATCAGCATTTCCGACAATCATCTCAAAATCCTCGACTATCTTGAGGAACTCTTTCTCCGCGATGCCGTTCCTGTCCCTGCCACCATCAGTGCTGCCTACTGCGCCGTGGCGGTGGAATGCACAGTCAAATATCTACGTCTGAATCTTCCCCACAATCTTTTCTACCTCCGCGCCGTAAAGAGGATATGGCGACTTAGTACTGCGCACATGAGAGAAGGGAGCCTTCTCTTCTCGGTGGAATTGGAGGAGTGGAGAAACTACATTGAAACTTCACTTTTGGATTCACAAGTGAAGGAGCTATTGGCCTCCATGGACACAAGAGGCAGTGCCATTATCAAACTCAGGGCGTTTTTCGACGAAGCCTGTAAGGGCTCTCCTTTTGCTCCGTTAACAGCTACCGAGCACACAGCTACCGAGCACACAGCTACACAGCACACAGCTACACAGCACACGATTGAGGCTCAAGGAAGCGAAGAAGGAGTTGAAAAGATTGGGGAAGCCTTGGAAGATAGTGAGAAGACATTTTTCTCTTGGTCATCGGATATAAATGATGATGAGGTGGAGCAAGTGGAAAATGCAGCCGGTGTTGACGAGCGGGATTTAGAAGATAATCTGGAGGTTGGCACATCAAGATTTAATTTGGCGAGTCCTAAAAAGAAAAAACTTTCTCCGTTGAAAATCTACAAACCAGTAACCATTAGAAGGAGAAGAACAACGAAAAAATGGAATCGGTTAGAAGAAGAGACACTTAAAAATGGCGTAGAGACGTTTGGCAGGGGAAAGTGGAAGTTAATCCTAAATGCACACAAGGATATATTTGGGGAGAGAACCGAAGTTGATCTGAAAGATAAATGGAGAAATATGATGGTGTATGGCTGCAAATGA 1314 0.4734 MIVNIDRSCLHDCGSHYDVANQDAGKEVTDVGRPVKPEMGVREQERLVTLEGSLLQVEGSLPPWKAHRRRRLAAPVCRKMERMDDLRNALLEFLIRSPFRDTEEKESMVKHMLQVYSKSDNDSGFKKTFLLKIIQNDLLSSHSISISDNHLKILDYLEELFLRDAVPVPATISAAYCAVAVECTVKYLRLNLPHNLFYLRAVKRIWRLSTAHMREGSLLFSVELEEWRNYIETSLLDSQVKELLASMDTRGSAIIKLRAFFDEACKGSPFAPLTATEHTATEHTATQHTATQHTIEAQGSEEGVEKIGEALEDSEKTFFSWSSDINDDEVEQVENAAGVDERDLEDNLEVGTSRFNLASPKKKKLSPLKIYKPVTIRRRRTTKKWNRLEEETLKNGVETFGRGKWKLILNAHKDIFGERTEVDLKDKWRNMMVYGCK* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1891 437 Pfam Myb-like DNA-binding domain 382 431 IPR001005 -
Vra5g1891 437 SMART sant 381 434 IPR001005 -
Vra5g1891 437 CDD SANT_TRF 383 432 - -
Vra5g1891 437 ProSiteProfiles Myb-like domain profile. 377 432 IPR001005 -
Vra5g1891 437 PANTHER MYB TRANSCRIPTION FACTOR 343 434 - -
Vra5g1891 437 PANTHER MYB TRANSCRIPTION FACTOR 85 344 - -
Vra5g1891 437 SUPERFAMILY Homeodomain-like 384 435 IPR009057 -
Vra5g1891 437 Gene3D - 385 437 - -
Vra5g1891 437 PANTHER MYB TRANSCRIPTION FACTOR 343 434 - -
Vra5g1891 437 PANTHER MYB TRANSCRIPTION FACTOR 85 344 - -
Vra5g1891 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 377 436 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1891 Vra-Chr5 24665055 24668806 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1891 170 432 Single Myb Histone (SMH) Gene Family AT1G15720 26.144 1.52e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra5g1891 Myb_DNA-binding 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1891 - K11111 vra:106760514 840.491