Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1890 ATGGAGAGAATGGATGATCTTCGCAACGCTTTACTAGAATTCCTCATTCGGAGCCCATTTCGGGACACTGAGGAAAAAGAGAGCATGGTGAAACATATGCTCCAAGTCTACTCCAAGTCTGATAATGATTCCGGTTTCAAGAAGACGTTTCTCCTGAAGATCATTCAAAATGACCTCCTCTCTTCTCACTCCATCAGCATTTCCGACCATCATCTCAAAATCTTCGACTATCTTGAGGAACTCTTTCTCCGCGATGCCGTTCCTGTCCCTGCCACCATCAGTGCTGCCTACTGCGCCGTGGCGGTGGAATGCACAATAAAATATCTACATCTCAATCTTCCTCACAATCTTCTCTACCTCCGCGCCGTGAAGAGGATATGGCGACTTAGGATTTCGCATATGAGAGAAGGGAGCCTTCTATTCTCGGAGGAGTTGGAGCGGTGGAGAAGCGACCTTGAAACCTCACTTTTGGATTCAAAAGTGAGGGAGCGATTGGCTTCGACAGACACTAGAGGGAATGCCATTATGAAACTCCGGGCGTTTTTTAATCAAGCCTCTACCGTTTTTGGCTGTCCTTTTGCTCCGTTAACAGCTATCGAGAATGAGGCCCAAGGAAATGAAGGAGGTCATACGGAGCACACGGATAACACCCAACGAAACGAAGAAGGAGTTGAAAACATTGGGGATTGCATTTCTGGGGAGTTGCAAGAAGATAATGAGAAGACGTTTTTATCTTGGTCAACGGATATAAATGATGATGAAGTGGATCAAGTGGAAAAAGATCAAGTGAAAGATGAAGCAGGGCGGGTTAGAACATCAAGATTTCATTTGGCCAGTCCCAATAAGAAAAAACATTCTCCATTAAAAATCTACAGACCAGTAGCCATTGCAAAGAGAAGAACAACAAAAAGGTGGAGTCGGTTAGAAGAGGAGACACTTAAGAATGGCGTAGAGACGTTTGGCAGGGGAAAGTGGAAGGTAATCCTAAATGCACACAAGGATATATTTGGGGAGAGAACCGAGGATGATTTGAAAGATAAGTGGAGAAGCATGATCCTCTATGGCTGCAAATAA 1074 0.4469 MERMDDLRNALLEFLIRSPFRDTEEKESMVKHMLQVYSKSDNDSGFKKTFLLKIIQNDLLSSHSISISDHHLKIFDYLEELFLRDAVPVPATISAAYCAVAVECTIKYLHLNLPHNLLYLRAVKRIWRLRISHMREGSLLFSEELERWRSDLETSLLDSKVRERLASTDTRGNAIMKLRAFFNQASTVFGCPFAPLTAIENEAQGNEGGHTEHTDNTQRNEEGVENIGDCISGELQEDNEKTFLSWSTDINDDEVDQVEKDQVKDEAGRVRTSRFHLASPNKKKHSPLKIYRPVAIAKRRTTKRWSRLEEETLKNGVETFGRGKWKVILNAHKDIFGERTEDDLKDKWRSMILYGCK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1890 357 CDD SANT_TRF 303 352 - -
Vra5g1890 357 Pfam Myb-like DNA-binding domain 302 351 IPR001005 -
Vra5g1890 357 SUPERFAMILY Homeodomain-like 304 354 IPR009057 -
Vra5g1890 357 PANTHER MYB TRANSCRIPTION FACTOR 6 241 - -
Vra5g1890 357 PANTHER MYB TRANSCRIPTION FACTOR 269 352 - -
Vra5g1890 357 ProSiteProfiles Myb-like domain profile. 297 352 IPR001005 -
Vra5g1890 357 PANTHER MYB TRANSCRIPTION FACTOR 6 241 - -
Vra5g1890 357 PANTHER MYB TRANSCRIPTION FACTOR 269 352 - -
Vra5g1890 357 SMART sant 301 354 IPR001005 -
Vra5g1890 357 Gene3D - 305 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1890 Vra-Chr5 24621059 24623614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1890 91 352 Single Myb Histone (SMH) Gene Family AT1G15720 26.752 4.65e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra5g1890 Myb_DNA-binding 4.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1890 - K11111 vra:106760514 521.161