Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1889 ATGGAAGCCACAAAGGAAAACCGCCTGCCCTCTTCAGATCTTCAAGGGCATCCAAGAATGGAGGAGAATCTGAAGGCCCTCCATCACCGGTTGCCTCTCCGTAGCATCAATCAGAATCTTATGCCTAACAGAAGCCCTGTTCATTCCCGCAAGAGCAAAGGACACACAGTTCTGCATCATCAACCCCCTCAGCCTCATGCAACTAAGAAACAGAACATGTTGGCTCCCAACCCGAGCTACACCTTTGACTGTGAAATCATAGCTATCGACGACGACGATGAGGATGCCAGTGACAATGCAGTTCCAGAATTCGTCAAGCATACTGAAGCCATGCTCGATGAAATAGACAGGATTGAGGAAGTTGAAATGGAAGATGTGCAGGAACCTGTTTTAGACATCGACGCCTGCGATAGGACAGACCCACTTGCAGTTGTTGAGTACATCGATGATATCTACAGCCTCTACAAGAAAATCGAGGATTCGAGCTGTGTCTCTCCAAATTACATGACTAATCAATTTGACATTAATGAGAGGATGAGAGCCATTCTTGTTGACTGGCTTATTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACATTGTTCCTTACTGTCAATCTCATCGACAGGTTCCTGGAGCGTCAGTCAATGATCAGAAAGAAACTTCAGTTAGTCGGCGTAACAGCTATGCTAATAGCTTGTAAGTACGAGGAGGTCTCAGTCCCAACTGTTGAGGATTTTATTCTGATAACAGACAAGGCATATACAAGAGATGAAGTTTTAGCTATGGAGAAATTGATGATGAACAGTTTGCAATTCAACTTGTCGGTGCCTACTCCATACATGTTCATGAGAAGATTTCTGAAGGCAGCTCATTGTGATAAAAAGCTGGAGCTCTCGTCCTTCTTCTTGGTTGAGCTTTGCTTGGTGGAATACAAAATGCTGAAGTTTTCACCATCTTTGCTAGCTGCTGCAGCCATTTTCACAGCTCAATGTAGCATGTACCAGTTTAAGCAATGGACTAAGACCAGTGAGTGGTATACTGATTACTCAGAAGAGCAGCTTCTAGAATGCTCAAGGCTGATGGTTACTTTCCATCGGAAAGCTGGATCAGGAAAACTCACCGGTGTATATAGAAAGTACAGTACATGGAGATATGGCTGTGCCGCAAAAGTAGAGCCAGCTCTGTTTTTACTGGATAATTAA 1206 0.4403 MEATKENRLPSSDLQGHPRMEENLKALHHRLPLRSINQNLMPNRSPVHSRKSKGHTVLHHQPPQPHATKKQNMLAPNPSYTFDCEIIAIDDDDEDASDNAVPEFVKHTEAMLDEIDRIEEVEMEDVQEPVLDIDACDRTDPLAVVEYIDDIYSLYKKIEDSSCVSPNYMTNQFDINERMRAILVDWLIEVHYKFELLEETLFLTVNLIDRFLERQSMIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRDEVLAMEKLMMNSLQFNLSVPTPYMFMRRFLKAAHCDKKLELSSFFLVELCLVEYKMLKFSPSLLAAAAIFTAQCSMYQFKQWTKTSEWYTDYSEEQLLECSRLMVTFHRKAGSGKLTGVYRKYSTWRYGCAAKVEPALFLLDN* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1889 401 Pfam Cyclin, N-terminal domain 150 276 IPR006671 -
Vra5g1889 401 Gene3D - 150 391 - -
Vra5g1889 401 CDD CYCLIN 179 268 IPR013763 -
Vra5g1889 401 PANTHER CYCLIN-B2-3-RELATED 53 396 - -
Vra5g1889 401 Pfam Cyclin, C-terminal domain 278 393 IPR004367 -
Vra5g1889 401 Gene3D - 164 276 - -
Vra5g1889 401 CDD CYCLIN 276 363 IPR013763 -
Vra5g1889 401 MobiDBLite consensus disorder prediction 39 73 - -
Vra5g1889 401 SMART Cyclin_C_2 278 395 IPR004367 -
Vra5g1889 401 SMART cyclin_7 282 364 IPR013763 -
Vra5g1889 401 SMART cyclin_7 185 269 IPR013763 -
Vra5g1889 401 PANTHER CYCLINS 53 396 IPR039361 -
Vra5g1889 401 SUPERFAMILY Cyclin-like 277 394 IPR036915 -
Vra5g1889 401 PIRSF Cyclin_A_B_D_E 3 401 IPR039361 -
Vra5g1889 401 SUPERFAMILY Cyclin-like 140 275 IPR036915 -
Vra5g1889 401 ProSitePatterns Cyclins signature. 180 211 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1889 Vra-Chr5 24613178 24616081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1889 34 399 Core Cell Cycle Gene Families AT1G20610 58.556 3.87e-157 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1889 K21777 - gmx:100812029 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1889 5 24613178 24616081 Vra5g1889 5 24613178 24616081 ECH