Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1880 ATGTTAATACAAACTTCTCTCCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGATCGGATGCCTAGTGGTGAAACTTGGCAGGTATGTGTCGAATGCAATAGGTACCCTCTTGACTGGTGTAGAAAAGCTGAACCAGTGGAGTCAGATAGAAGGAAAGCTGATGATCCTTACCGCTCAAGCTCAGGTCAGACATCAACTGCTAGTATAATGACAGAAAATACTACACCTAAACCTAACATGGTATACAGGAGAAAGAAGCTTCGTAAGGACTCAAACTTCAAACTAGAGCCAACTAATATGCTGGCAAGTGCAAATTACCCTTCAGTCGTAAGCTCTGCTGCACATTTATTGTCAGCTGAGGAACAACCTGCTGGTTTTCGAGTAAATCATGAAATTGAAGTGGATAAAAATCCTACCACACCTTCAGTCTTGTGTCATGGAGTAACCAAAGATAACATTCATAAAAACTTAGGTATTAGCAATGTAAATGGTAGTTGCTCCTCTTCAAAGGCAGATATGGAAACTGAAATGAATGGAAATGGTGAATGGTCCACCTCTAATGTAATAGTCATGGATTCCACAAGGGAAGAAGTGACAGAAAAGGATTTCTGCATTAATACTTTAAGAACCCATGGACTTCTTGGAGAATATTCTCCTGAAGACAATGTGGCTTCAGGGGAAGATACTGTCATCACGGGTAATAACTGCTGTTCCAGGTCATGCAAAATATGTGATCGTGTAGACAGTTCATTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCCATCTTGCTACAATCCACGTTTGAAAAAATTGCCAATTGATGAATGGTTTTGTCATTCATGTCTTAAGAAAAGGCAAAAAAATCTCAAGGAACCAAGTATCCACAATGAATTGGGCAAATGTAGAGCTACCTCAGTCAAGGGTGAATCAAATCCCATACTTTTGATGTTGAGAGACACCAAGCCATATACATCTAGTGTGCGGGTTGGTAAAGGATTTCAAGTAGAAGTTCTTGATTGGTCAGGTCCGATAAAAAGTGATGAAGATACCCTTCCTGAACCATTAGAAATTAATCCTTCAGACTTCAATAGACTGCTGGAAGAGAATACGCGAAGTCCTGCTAAACTTAGTGCCATTGGTAATTGGATCCAATGTCAGACAGTTATAGACAGAGCTAATGGAACTATATGTGGAAAATGGCGCAGGGCACCTTTTTTTGAAGTTCAAACTAATGCCTGGGAGTGCTTTTGTGCTATCCATTGGGATCCATCTCATGCTGATTGTGCTGTGCCTCAGGAGCTTGAAACAGATCAAGTATTGAAGCAACTGAAGTATGTGGAAGTGCTACGGCCACGAATATCTGCTAAACGGAAGAAATCAGATAGCACACAAGATATGGATTGA 1446 0.4011 MLIQTSLLSSVEAGLCYVSDDGKDVLCDRMPSGETWQVCVECNRYPLDWCRKAEPVESDRRKADDPYRSSSGQTSTASIMTENTTPKPNMVYRRKKLRKDSNFKLEPTNMLASANYPSVVSSAAHLLSAEEQPAGFRVNHEIEVDKNPTTPSVLCHGVTKDNIHKNLGISNVNGSCSSSKADMETEMNGNGEWSTSNVIVMDSTREEVTEKDFCINTLRTHGLLGEYSPEDNVASGEDTVITGNNCCSRSCKICDRVDSSLNMLLCDHCEDAYHPSCYNPRLKKLPIDEWFCHSCLKKRQKNLKEPSIHNELGKCRATSVKGESNPILLMLRDTKPYTSSVRVGKGFQVEVLDWSGPIKSDEDTLPEPLEINPSDFNRLLEENTRSPAKLSAIGNWIQCQTVIDRANGTICGKWRRAPFFEVQTNAWECFCAIHWDPSHADCAVPQELETDQVLKQLKYVEVLRPRISAKRKKSDSTQDMD* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1880 481 ProSitePatterns Zinc finger PHD-type signature. 251 295 IPR019786 -
Vra5g1880 481 SUPERFAMILY FYVE/PHD zinc finger 237 300 IPR011011 -
Vra5g1880 481 PANTHER HISTONE ACETYLTRANSFERASE 21 474 - -
Vra5g1880 481 Gene3D - 394 459 - -
Vra5g1880 481 SMART PHD_3 250 296 IPR001965 -
Vra5g1880 481 MobiDBLite consensus disorder prediction 68 86 - -
Vra5g1880 481 ProSiteProfiles Zinc finger PHD-type profile. 248 298 IPR019787 -
Vra5g1880 481 PANTHER REMODELING AND SPACING FACTOR 1 21 474 - -
Vra5g1880 481 Pfam PHD-finger 251 297 IPR019787 -
Vra5g1880 481 ProSiteProfiles Zinc finger CW-type profile. 390 450 IPR011124 GO:0008270
Vra5g1880 481 MobiDBLite consensus disorder prediction 56 86 - -
Vra5g1880 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 309 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1880 251 296 C2H2 Transcription Factor Family AT3G01460 41.304 3.65e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra5g1880 PHD 7.3e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1880 - - gmx:100813057 801.201