Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1872 ATGGTGAATGGCGAACACAACCTGCCAAAGCAACCCAACGTTAACGTTTCCGATCATCAGAGCATGTCCAAGAACCACATCTCACCCACCCTTCGCAGGTTTCGGTTTCGGTCCAGAAGGAAGAAAACCACCGCTGCTAGCCCCATCTCATCGCTCAACCTCCGCGCATACGACATCGACGGCACCAACAGTCCCTACTACAAGGGTCTGACTGACCACTCCCTTGCGATTGTGAACACCATACCCTCCTGCGCTCAATCTCATTCTCACACCCCTTCCTCCGACCTTCTTTCCAGTCCTTATTACAAAGGCCTTACGGACTATTCCCTTGTTATTCGTCCCTGGACTCCTCACAATCACCCTCTTCCTTTTCCCCACAACTCCCTTTCCTACACCCCTAGTCCTTACTATGCAGGTCTTCTCACTCACTACACCATTCTCTTTCATGCACGCTCAATTCAACCTTCTTTCACTACAAACCTTCCAAACATCAAGACCCAGCCTACTTTGAAGGACTTGATGGTCGATCCTCGTCACGTTGGCTTTGCTACTCAAGAAACTGATCAAGTTGGCAATCATACATTGGAAGAACTTGGGGAGAAAACTACTGTAGTTGATCAAGAGAAGCCATTGAGAGAGAATGATTTTGATATTGAGATGGTGACTGAAGAGAAGGCCTTGGGGGAGAGTGTATTCGAGCAGGCTACTGATGAGTTTGAGGGTGTGTCAAAAGAAGCAATCTTTGATAGAAAGTTGATGAGTGATGATGCTGTTGTTGAAGAGAAGCCATTGGGGGAGAAATCATCGGAAACAAGCGAGATGGATTTGTGGAAGAAACAGGAAGTGTTGCCTCTTGTTTCATCAGAAGCAGTTGCTGTTTCGCCTGAATCTGAATGTAAAGAAGGAGATGTTTACGATTATACATGGGCAGCCAAATACCAACCCATGGCCTTGGAAGAGTTCATCTGCAACAAAGATATAGCAAGTCAACTCAAAACAATGGTAGAAGGTGGTTGTGGGTGCAGCCACTTTATATTTGAAGGACCACCAAGTGTGGGGAAGAGATCCATGATAAGGGCTATGCTTCGAGAGGTATTTGGCTCCGACAGGGTCCAGGTCGAAGAAGAATATAAAAACTTCATTTTGAAGGGAGAAATGGTTGATAGTGTGCAAGTGCGCGTAAAGAAATCATTCCATCATGTTGAGGTGAATCTGTCAGAGACAAATGGATATGAAAAACATGTAATTGTTGATTTATTCAAGGAAACATACGGGCAGGTGATAGATAACTCGCAACCTTGTTGCCCAGAAAACTGCAAAGCAATCGTTTTGTATGAGGCGGAGAAGCTGTCGATAGAATCGTTGTTGTATATTAAGTGGCTGCTAGAGAAGTACGAAGGGTGTAATAAGGTTTTCTTCTGTTGCTCTGATGAATCTAAGCTTCAACCTGTGAAGCCACTTTGCATCACTCTCCGCCTTTCATCGCCATCAACCCAAGAGCTAGCTACGATTTTGGAAAACATTGCAATAGCAGAAGGAATACAGTTACCACGCCACTTAATCGATACCATAATTTTGAGGTCCAACAACAACCTACGCCAAGCCATTCGTTCGTTAGAGGCCACTTGCCGAAACAGGGATGCTGTCAAAGAGAACGACGTGATTCTAACTGGTTGGGAACAAGATATTTTGGATATTGCCAAAAAAGTAATCCAAGAACAAAGTCCACGACAGCTGTACGCCATTCGTAGAAAGCTACGAAGTCTTATGATCCATGATGTTCCTCCTGACTTTATATACAAGTCTTTGGTACCAGAATTAACCAGTCTTGTTCATCACTCGCTACGCCCAGGGATTGCCAAACTCGACAGGGACTTCATGAGACCCAGTGAAATGAAATTTGAAACTATGAAGCAGCACTTGTGTCATGCTCAAAAACAGTCCGAATCTGATGAGAAGAACACTGATTCAACAAAAAAGAATGCCTTAACTTACTTAAAAGTAGAAGAGTTTATAGCGAAAGTGATGAGCTGGTACAAGAATTGGTCTGAAAAAGACACTAAGCTGTAG 2070 0.4415 MVNGEHNLPKQPNVNVSDHQSMSKNHISPTLRRFRFRSRRKKTTAASPISSLNLRAYDIDGTNSPYYKGLTDHSLAIVNTIPSCAQSHSHTPSSDLLSSPYYKGLTDYSLVIRPWTPHNHPLPFPHNSLSYTPSPYYAGLLTHYTILFHARSIQPSFTTNLPNIKTQPTLKDLMVDPRHVGFATQETDQVGNHTLEELGEKTTVVDQEKPLRENDFDIEMVTEEKALGESVFEQATDEFEGVSKEAIFDRKLMSDDAVVEEKPLGEKSSETSEMDLWKKQEVLPLVSSEAVAVSPESECKEGDVYDYTWAAKYQPMALEEFICNKDIASQLKTMVEGGCGCSHFIFEGPPSVGKRSMIRAMLREVFGSDRVQVEEEYKNFILKGEMVDSVQVRVKKSFHHVEVNLSETNGYEKHVIVDLFKETYGQVIDNSQPCCPENCKAIVLYEAEKLSIESLLYIKWLLEKYEGCNKVFFCCSDESKLQPVKPLCITLRLSSPSTQELATILENIAIAEGIQLPRHLIDTIILRSNNNLRQAIRSLEATCRNRDAVKENDVILTGWEQDILDIAKKVIQEQSPRQLYAIRRKLRSLMIHDVPPDFIYKSLVPELTSLVHHSLRPGIAKLDRDFMRPSEMKFETMKQHLCHAQKQSESDEKNTDSTKKNALTYLKVEEFIAKVMSWYKNWSEKDTKL* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1872 689 PANTHER OS10G0574500 PROTEIN 91 683 - -
Vra5g1872 689 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 91 683 - -
Vra5g1872 689 Gene3D - 497 557 - -
Vra5g1872 689 Gene3D - 307 496 IPR027417 -
Vra5g1872 689 SUPERFAMILY post-AAA+ oligomerization domain-like 558 618 IPR008921 GO:0003677|GO:0006260
Vra5g1872 689 MobiDBLite consensus disorder prediction 1 28 - -
Vra5g1872 689 Gene3D - 558 679 - -
Vra5g1872 689 MobiDBLite consensus disorder prediction 1 29 - -
Vra5g1872 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 554 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1872 Vra-Chr5 24500190 24505602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1872 309 682 Core DNA Replication Machinery Family AT5G27740 30.079 3.10e-48 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1872 K10756 - gmx:102664389 809.675