Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1870 ATGGAGATTGATCTTGAGGTACCTATATGTGAGCATGAGAAGCTTTATATTGGATCTAGTGGAAATAATGTTACAGATACAACATGTGATATATGTATCGAGGAGCATAAAATCAATCCTTCGTCAATGACTGCAAACTGTAAGGAAGTTTTAAGTGAAAAAGCTTTCTGCTGTCAGGATCCGGTGGATTTGAATTCTAATCAAGTGGATGCAATTGATAAATTTCCCATTAAAGAACCACAAAATGGCTTGGAATTTGAATCAAAGGAGGCTGCGTATTCTTTCTACAGAGAATATGCTCGCTCAGTGGGTTTTGGCATCACGATAAAAGCCAGTCGACGCTCGAAAAAGTCAGGAAAATTTATTGATATTAAAATTGTTTGTTCTAGATTTGGAAGTAAGCGTGAGTCCGGTACAGTTGTTAATCCACGACCATGTACAAAGACAGACTGTAAGGCTGGAATGCATATGAAGAAGAAGCTAGATGGGAATTGGATTATATACAATTTTGTAAAAGAGCACAATCATGAGATCTGTCCCGATGATTTTGTCACGGGACGTAGCAAACAAATAAGTAATCTAGCTTGTCGTAAGAAGGGCATGCAATTGGCTCTAGACGAGGTTGATGTGCAGTTGATCATCGAATACTTTATCTCCATGCAGTGTGAAAATCCGAACTTCTTTTATGCAATAGACCTGGATCAGGATAGACATTTAAGAACTGTATTTTGGGTTGACTCAAAAGGAAGATTTGATTATAAAAAGTTTCATGATATTGTGTTGATTGACACTTTTTACCTGAAAAACAAATATAAAATTCCTTTTGTTCCTTTTGTCGGGGTCAACCATAACTTCCAGTACATTTTACTTGGATGTGCACTGGTTGGGGAAGACTCTGTTTCAGCTTTTATGTGGTTAATGCAAGCATGGCTCAAGGCAATGAGTAACCTACCTCCCGAGGTGATTATCACAGATCAGGAGCAATTCTTGAAAGAAGCTGTCATGGAAGTGTTTCCAGATAAACGTCATTGTTTCTGCCTATCACATGTTTTATGTAAAATAACCAAGAATTTGGATTATATCATAAACGAAAATAATAATTTTATGGAAAAATTTGACAAATGCATTCATCATTCCTGTTCAGATGAGAAATTTGAAGAGAGATGGTGGAAGTTGATGAATAGAATTGAACTAAAGGATGATGAATTGGTTCGGTCATTGTATGAAGATCGTAAAAAGTGGGCGCCGACATTCATGCGGGACATTTCTTTGGTTGGATTGTCAACAATTGAAAGATCTGAGAGTATATCATCTTTCTTTGACAAGTATATCCGTGTTGATTCTACCTTTAAGGAATTTATTGAACAGTATAAAGTTTTCTCTGTAGACTGTTTTGACATTGAAGCCAAAGCTGACATTGAAACAAAACAAAAGCAACCTACATTACGATCTTTATCACCTTTTGAGAAGCAGCTATCTGCAATTTTTACTGATGCCATATTTAGAAAATTTCAGTTGGAAATATTGGGAATGATGTCCTGTCATCTCCAGATGGAAACAGAAGGAAGGGAAAATCTGACATTTCTTGTTCATGATTTTGAGAAGCGGAAGAAATTTTTTGTTTCTTGGAAGGAAGCAGATTTGTATGTCTGTTGTTCATGTTGTTTATTTCAATACAAAGGTTTTCTATGTAGACATGCAATGCTTGTTCTTCAGAAGTCGGGCATAACCAGCATTCCGTCCTATTATATTTTAAAAAGATGGACAAAAGATTCAATGGCCGATCAATTTTCTGGTGACATAATTACCAGGACTGCTAATCGAGTTCAACGATTTAATGACCTTTGTAGGCGGGCAATTGTATTAAGTGAAATTGGATCTTTATCTGAAGATACTTACCGTGTTGCATCTCAGGCCATGGAAGAACTGTATAAACACTGTGTGAACACAAAATATTCTGCCAGAAGCACTTCGGATCCCAACAAGTTGGCTCTTGATGCTTTTGACGTTGGAGATAAAAATTATGGCTGCAACAGGGCAAAACCTACTAACAAAAGGAAGTCATTCAGTAAAAGGGAATGCTCTGATCCAGAAAGAATCAATATCAAGACGATGGATGATCTCAGAATGAGGGGTCATCAGTGTTATCTTTATGTGCAGGAACAGAGAATTGCAAGAGCGCACTTCAATAATTGTTACATTTATCAGCAGAACATGCAAACTGTGGATTTGGATTCTAGAGCTTCGACCCTTGATGCCTATTACGGGACTCAGCAGAGTGTGCTTGAAGATGGGCAATTGCATTCCATTGCAAGCCGTGGTCCACATTATGGGATGCAGCACAGGATGCAAAGACCGCTTCAAGGAGAGCTCACTTTCAGAACGCCAACAGTACAAGGGTGTTTTGACCTCCAAGATAGTCTAGAAGCTATAGAAGAACCTATTAAGCCTCACAGTTCCATGACATTGCATCAAAGCAACTAG 2484 0.3784 MEIDLEVPICEHEKLYIGSSGNNVTDTTCDICIEEHKINPSSMTANCKEVLSEKAFCCQDPVDLNSNQVDAIDKFPIKEPQNGLEFESKEAAYSFYREYARSVGFGITIKASRRSKKSGKFIDIKIVCSRFGSKRESGTVVNPRPCTKTDCKAGMHMKKKLDGNWIIYNFVKEHNHEICPDDFVTGRSKQISNLACRKKGMQLALDEVDVQLIIEYFISMQCENPNFFYAIDLDQDRHLRTVFWVDSKGRFDYKKFHDIVLIDTFYLKNKYKIPFVPFVGVNHNFQYILLGCALVGEDSVSAFMWLMQAWLKAMSNLPPEVIITDQEQFLKEAVMEVFPDKRHCFCLSHVLCKITKNLDYIINENNNFMEKFDKCIHHSCSDEKFEERWWKLMNRIELKDDELVRSLYEDRKKWAPTFMRDISLVGLSTIERSESISSFFDKYIRVDSTFKEFIEQYKVFSVDCFDIEAKADIETKQKQPTLRSLSPFEKQLSAIFTDAIFRKFQLEILGMMSCHLQMETEGRENLTFLVHDFEKRKKFFVSWKEADLYVCCSCCLFQYKGFLCRHAMLVLQKSGITSIPSYYILKRWTKDSMADQFSGDIITRTANRVQRFNDLCRRAIVLSEIGSLSEDTYRVASQAMEELYKHCVNTKYSARSTSDPNKLALDAFDVGDKNYGCNRAKPTNKRKSFSKRECSDPERINIKTMDDLRMRGHQCYLYVQEQRIARAHFNNCYIYQQNMQTVDLDSRASTLDAYYGTQQSVLEDGQLHSIASRGPHYGMQHRMQRPLQGELTFRTPTVQGCFDLQDSLEAIEEPIKPHSSMTLHQSN* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1870 827 Pfam MULE transposase domain 259 351 IPR018289 -
Vra5g1870 827 ProSiteProfiles Zinc finger SWIM-type profile. 537 575 IPR007527 GO:0008270
Vra5g1870 827 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 770 IPR031052 GO:0006355
Vra5g1870 827 SMART 26again6 550 577 IPR006564 GO:0008270
Vra5g1870 827 Pfam SWIM zinc finger 551 573 IPR007527 GO:0008270
Vra5g1870 827 PANTHER PROTEIN FAR1-RELATED SEQUENCE 2 40 770 - -
Vra5g1870 827 Pfam FAR1 DNA-binding domain 94 179 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1870 Vra-Chr5 24491717 24496333 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra5g1870 MULE 8.6e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1870 - - gmx:100802811 1290.02