Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1869 ATGGTGGTTGGGAGAGTTGCTGTTCCGAATCCTCCCTCCGGTCTGTTCCACAATCCTTCTTCTGCTGCCACCCTCATACCTCCACACACTCGTCTTCTCTCTTTCTCCGCTTCCGCCGCCTCCTCCTCCGCTAATCGCACTCGTCACACGTCCACTACAAAAAACGATTCTCCCTTCTCAACCTTCGGAAGAGTCAAGACTCAGAAACCGAAAACTCTGCTCCACAGAAGCAGGGACCGAAGACGCGTCCTTCAAGTTGAAGAAGAAGAAGAAGACGATAATGATGATTATGATGATAATGACGACTACTATGACAATCTCGCAGCCCCGAGAGGAAGACCTTCTCATTCTGGGTCTCGGTCAGGTGGACGAAAACGAGGAGGATGGGATATCATTCCCAGGTTTCCCTCACAAACCAAATCAACCACTGACACAAACTTCTTCAGTCTCAAGTCATTTAAAGAAATTGGGTGCGCTGACTACATCATTCAATCCCTCCAAAAAATCTTCTTAACGCGCCCTTCCCATGTACAGGCCATGGCATTTGCTCCTGTTCTTAGCGGAAAGACTTGTGTCATAGCTGACCAAAGTGGTTCTGGAAAGACATTGGCTTATCTTGCACCAATCATTCAGCGTCTTAGACAAGAAGAACAAGAAGGACGTAGTCAATCCTCTTCTCAAGCTCCTAGAGTGCTGGTACTCGCGCCCACTGCAGAGTTAGCTTCTCAGGTCTTGGATAATTGTCGATCCTTGTCAAAATCTGGGGCTCCATTCAAATCTATGGTTGTCACGGGAGGTTTTCGACAAAAGACTCAACTGGAAAATTTACAGCAAGGAGTTGATGTCTTAATAGCAACGCCTGGCCGTTTTTTGTACCTCATGAATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAAGTAGATATTCTCTTTGGTGATGAGGACTTTGAAATGGCTCTTCAATGCCTGATCAATTCTTCACCGGTTGACACACAGTATCTATTTGTGACTGCAACTTTACCAAAAAATGTTTTCACCAAATTGGTTGAAGTTTTTCCCGACTGCGAAATGATTATGGGGCCTGGTATGCACCGAATAAGTTCTCGCCTTGAAGAGATTCTAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAAACCGCACTTCTGCAGCTTGTGGAGGAAAGTCCTGTTCCAAGAACACTTGTGTTCTGCAACAAGATTGAAACGTGCAGAAAAGTTGAAAATTCATTAAGGCGTTTTGATAGAAAAGGAAATCACATGCAAGTTCTACCCTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGCATGGAAGAGTTTACTCGTCCTCCATCAAAAGGAGTCTCCCAGTTTATGATTTGCACTGACAGGTAA 1443 0.4484 MVVGRVAVPNPPSGLFHNPSSAATLIPPHTRLLSFSASAASSSANRTRHTSTTKNDSPFSTFGRVKTQKPKTLLHRSRDRRRVLQVEEEEEDDNDDYDDNDDYYDNLAAPRGRPSHSGSRSGGRKRGGWDIIPRFPSQTKSTTDTNFFSLKSFKEIGCADYIIQSLQKIFLTRPSHVQAMAFAPVLSGKTCVIADQSGSGKTLAYLAPIIQRLRQEEQEGRSQSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGAPFKSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLYLMNEGFLQLTNLRCAVLDEVDILFGDEDFEMALQCLINSSPVDTQYLFVTATLPKNVFTKLVEVFPDCEMIMGPGMHRISSRLEEILVDCSGEDGQEKTPDTAFLNKKTALLQLVEESPVPRTLVFCNKIETCRKVENSLRRFDRKGNHMQVLPFHAAMTQESRLASMEEFTRPPSKGVSQFMICTDR* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1869 480 CDD DEADc 162 349 - -
Vra5g1869 480 MobiDBLite consensus disorder prediction 37 140 - -
Vra5g1869 480 SMART ultradead3 170 378 IPR014001 -
Vra5g1869 480 Pfam DEAD/DEAH box helicase 176 349 IPR011545 GO:0003676|GO:0005524
Vra5g1869 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 354 IPR027417 -
Vra5g1869 480 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 30 480 - -
Vra5g1869 480 Gene3D - 133 362 IPR027417 -
Vra5g1869 480 Pfam Helicase conserved C-terminal domain 399 479 IPR001650 -
Vra5g1869 480 MobiDBLite consensus disorder prediction 88 103 - -
Vra5g1869 480 MobiDBLite consensus disorder prediction 37 67 - -
Vra5g1869 480 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 30 480 - -
Vra5g1869 480 Gene3D - 396 480 IPR027417 -
Vra5g1869 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 479 IPR027417 -
Vra5g1869 480 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 363 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1869 Vra-Chr5 24487074 24490412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1869 150 479 Eukaryotic Initiation Factors Gene Family AT3G19760 25.152 6.77e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1869 K13179 - gmx:100784377 662.529