Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1865 ATGGGTGATGAGAATGTTGCTGCTTCGTCTCATTTTGGTTTGATATCTCAAGAGGACCATCTCTGGTTCAGTTTCCTTGAACTAGAAGCTGCTTATACTCATAGCGTTCTGGAGGATCCTTCTATATCACAGTGTGTGGAGACACCGCCTCAAATCCAAAATCAAAACCGAGTGGTCGCAGCAGAAATGGAATGCGAATGTGAATACGGTAGTGAAGCGCACCGAGCAGCCTCGTTGAGTAGGTTCCGTCAAAAGAGAAAACGACGATGTTTTGCTAATAAAATAAGATACAAGACACGCCAAGAAGCTACTCTAAGGGTACATCGTAGTAAGAGCCAGTTTATTTTATCCAAAATCCATGAGTCAGAGCAAGATGTCATTCACTCCGAGATATTATGCTGTAACTGTGGCATTAGCTCAAAATGCACCCCTATGATGCGGCGAGGGCCATCTGGGCCAGCCTCACTTTGCAACGCTTGTGGCCTGTCTTGGGCAAACAGGGGTGTCTTCAATTATAAGAAAGCAATCTAA 531 0.4482 MGDENVAASSHFGLISQEDHLWFSFLELEAAYTHSVLEDPSISQCVETPPQIQNQNRVVAAEMECECEYGSEAHRAASLSRFRQKRKRRCFANKIRYKTRQEATLRVHRSKSQFILSKIHESEQDVIHSEILCCNCGISSKCTPMMRRGPSGPASLCNACGLSWANRGVFNYKKAI* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1865 176 ProSiteProfiles CCT domain profile. 75 117 IPR010402 GO:0005515
Vra5g1865 176 Gene3D - 130 175 IPR013088 GO:0006355|GO:0008270
Vra5g1865 176 SMART GATA_3 128 174 IPR000679 GO:0006355|GO:0043565
Vra5g1865 176 ProSitePatterns GATA-type zinc finger domain. 133 160 IPR000679 GO:0006355|GO:0043565
Vra5g1865 176 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 129 170 - -
Vra5g1865 176 Pfam CCT motif 75 115 IPR010402 GO:0005515
Vra5g1865 176 PANTHER GATA TRANSCRIPTION FACTOR 25 39 170 - -
Vra5g1865 176 Pfam GATA zinc finger 133 169 IPR000679 GO:0006355|GO:0043565
Vra5g1865 176 PANTHER GATA TRANSCRIPTION FACTOR 28 39 170 IPR045280 GO:0006355
Vra5g1865 176 CDD ZnF_GATA 133 169 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1865 Vra-Chr5 24473163 24474739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1865 50 170 Tify Gene Family AT4G24470 52.593 7.88e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra5g1865 CCT 3.4e-09 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1865 - - vra:106760511 365.155