Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1862 ATGGCTGATCCGCAACCGTTGCTGCTCAACGATTCGGAGCCAACTCAATTCCAGAACACCAGACCCACCCGAATCGCCTCCCTTGACGTCTTCCGCGGCCTCTCTGTTTTTCTTATGATACTGGTGGATTACGGGGGTTCCCTCTTTCCCATCATAGCTCATGCCCCCTGGAATGGGATTCACCTGGCTGATCTCGTCATGCCATTTTTTCTCTTCATTGCTGGAATTTCTCTTGCACTCGTTTATAAGAGAAGGCCGCAGAGAACACAAGCTACATGCAAAGCTTTCGCTAGAGCAGTCAAACTATTTGTTCTTGGTGTTGTTCTTCAAGGTGGCTATTTTCACGGTATAACTTCCTTGACTTTTGGTGTTGACCTTGAAAGAATTCGGTGGTTGGGAATTTTACAGAGGATATCTATTGGATACATTGTTGCAGCTTTATGCGAGATTTGGCTTCCACCTCCTCGATTGAAAGATATAAATTTCGTCAAAAATTACTACTGGCATGGGTTTGTTGTAGTAATATTGCTGGCACTTTACTCGGGATTACTGTATGGTCTATATGTTCCAGATTGGCAGTTTGATGTATCAGCCTCGACCTCTTCGTTGCCTCCTATTGGTGGTGGTGATATTTACACGGTCAATTGTTCAGTGAGAGGCGATCTTGGACCTGCTTGTAATTCAGCAGGAATGATTGATCGCTACATACTTGGTCTAGGCCATCTGTATAGAAAACCAGTTTACAGAAATCTTAGGGAGTGCAATATGTCTAAGGGTCAAGTTTCAGATAGGTCACCTTCATGGTGTCATGCTCCTTTTGACCCAGAAGGCATTTTAAGCTCCATAACAGCAGCAGTTTCATGCATAATTGGACTTCAATATGGTCACGTTCTTGCCCACCTACAGGACCACAAAGAACGCCTATACAACTGGATGTGTTTTTCCCTTTCCCTTTTGGCTCTTGGATTGTTCCTGGCCTTAACAGGCATTCCAATAAATAAAGCTCTGTACACCGTCAGTTATATGCTACTAACTTCTGCAGCTTCTGGTCTCACATTCATTGCTTTATATTACCTGGTAGATGTTCATGGCCAGAGGCGTTTGACAGCGGTGTTGGAGTGGATGGGAAAACACTCTTTGAGTATATTTGTCCTTGTATCTTCAAACATGGCCGTGATTGCTATTCAAGGATTTTATTGGAGTAAACCCGAAAACAACATTATAAACTGGATTGTGACACGTTTCGCTCTCTCTCTCACAATGTCCAAAGAACTCACCGAAGAGGGTCAACAAAGGAAGGACTACTTCGACCCTCCTCCCGCCCCTCTCATCGACCTCGCCGAGATTAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATCGCCACCCTCCTCTTCCTCTATGTCACCGTCGCCACCGTCATCGGTCACAAGAAACAGACCGGTCCTTGTGATGGCGTTGGCCTTCTCGGCATAGCTTGGGCCTTCGGTGGCATGATTTTCGTTCTCGTTTACTGCACCGCCGGCATTTCTGGTGGACACATAAACCCAGCGGTCACTTTTGGCCTTTTCCTGGCGCGCAAGGTCTCGCTCATCCGTGCTGTTCTCTACATTGTAGCACAGTGCCTTGGTGCTATCAGCGGCGTCGGGTTGGTCAAGGCCTTCATGAAGCACCCCTACAACTCCCTCGGCGGCGGTGCCAACTCCGTCAGTTCTGGCTACTCCAAAGGCACTGCTCTCGGTGCCGAGATTATCGGCACATTTGTGCTTGTCTACACCGTTTTCTCTGCCACCGACCCTAAGAGAAGCGCGCGTGACTCTCATGTCCCCGTGTTGGCTCCATTGCCCATTGGGTTCGCCGTTTTCATAGTTCACTTGGCTACCATACCCATTACCGGTACCGGGATTAACCCGGCCAGGAGCTTCGGAGCTGCTGTCATCTACAACAATGGCAAAGTTTGGGATGACCATTGGATCTTTTGGGTTGGACCGTTCGTGGGAGCGTTGGCGGCGGCGGCATACCACCAGTACATACTGAGAGCAGCGGCTATCAAGGCGTTGGGGTCGTTCCGGAGCAACCCCACGAACTAG 2097 0.4869 MADPQPLLLNDSEPTQFQNTRPTRIASLDVFRGLSVFLMILVDYGGSLFPIIAHAPWNGIHLADLVMPFFLFIAGISLALVYKRRPQRTQATCKAFARAVKLFVLGVVLQGGYFHGITSLTFGVDLERIRWLGILQRISIGYIVAALCEIWLPPPRLKDINFVKNYYWHGFVVVILLALYSGLLYGLYVPDWQFDVSASTSSLPPIGGGDIYTVNCSVRGDLGPACNSAGMIDRYILGLGHLYRKPVYRNLRECNMSKGQVSDRSPSWCHAPFDPEGILSSITAAVSCIIGLQYGHVLAHLQDHKERLYNWMCFSLSLLALGLFLALTGIPINKALYTVSYMLLTSAASGLTFIALYYLVDVHGQRRLTAVLEWMGKHSLSIFVLVSSNMAVIAIQGFYWSKPENNIINWIVTRFALSLTMSKELTEEGQQRKDYFDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIVAQCLGAISGVGLVKAFMKHPYNSLGGGANSVSSGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIYNNGKVWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1862 698 ProSitePatterns MIP family signature. 516 524 IPR022357 -
Vra5g1862 698 Pfam Heparan-alpha-glucosaminide N-acetyltransferase, catalytic 24 148 IPR012429 -
Vra5g1862 698 PANTHER HEPARAN-ALPHA-GLUCOSAMINIDE N-ACETYLTRANSFERASE-LIKE ISOFORM X1 1 413 - -
Vra5g1862 698 Gene3D Glycerol uptake facilitator protein. 441 698 IPR023271 -
Vra5g1862 698 TIGRFAM MIP: MIP family channel proteins 460 676 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1862 698 CDD MIP 456 680 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1862 698 Pfam Major intrinsic protein 449 676 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1862 698 PRINTS Major intrinsic protein family signature 456 475 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1862 698 PRINTS Major intrinsic protein family signature 498 522 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1862 698 PRINTS Major intrinsic protein family signature 535 554 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1862 698 PRINTS Major intrinsic protein family signature 584 602 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1862 698 PRINTS Major intrinsic protein family signature 620 642 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1862 698 PRINTS Major intrinsic protein family signature 660 680 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g1862 698 PANTHER LD22376P 1 413 - -
Vra5g1862 698 SUPERFAMILY Aquaporin-like 448 682 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1862 Vra-Chr5 24437777 24447225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1862 421 698 Major Intrinsic Protein MIP AT2G16850 89.928 6.29e-179 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1862 - - vra:106761912 1394.41