Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1857 ATGGCAAGCCACGAAGACGACCTCGATCTCCTTCTCTCTCTTCAAGACAGAGTTCCCGACACTCCTCCCGCTTCTCCCACACCAGGTTACCTTTCCGATGACGAATCGCTCAACCAAAGGGACAAACCTGACATGTCCGTATTCAAAAACGCCGTTCAAGATTGTCTTCCCTACGACCCCCCCAAAGCGCTCAAACCAACTAATAAACCTGTTACTGACGATTCCCAGCTTGAAAAGTTTTCAGGCCTTCGCATTAAGAACCAATTGTTTACTCCTGCGGAGTTGAAGGAACAATTTTCAGACATTCGCTTTGTTAGGTTATCTGTTATCAAGAATTCGTTGATTGGAGACAATGTCTCTGGAAATTGGGCCACGGTTGGTGTTTTGACTGAGAAGGGGAGTCAGAAGACGAGTTCAACGGGGAAAAGCTTTTCTATATGGAAAATTGGGTGTCTGGATGAATGTACCATTTCTCTTTTCTTGTTCGGAGATGCTTATCAGAGGAACATGCAAGAGCAAGCGGGAACGGTCTTTGCACTGTTTAACTGTGCTGTTCGCAAGGATAATGCGGGCAATGGTTTTTCTTTGAGTATATATTCCACCAGACAAATTGTGAAGATGGGCACCTCTGTTGATTACGGGGTTTGCAAAGGGAAGCGAACAGACGGGATGGCTTGTACGCTGGTCATAAATAAACGTCATGGGACATATTGCAAATATCATAAATCAAAAGCATCAGAGAAATATTCCACTATGCGAAGTGAACTCATGGGAGGAAACTTAAGAACAGCGTTTAGGCCTAAGTCTAGGGATCACCTCAAATCAGAAGGAATTTACTTAGTTGACCCCCTTGCTGACAAAACAAACTTGAAGAATTCTCGGCCAGTGAAACTATTGTCCACGGGTGCTCTTAGAAAGGTTTTGAGCAATGCAGGAAAAGTAACAACAACTCCTCATTCTCAAGGGATCAGGTTTCTTTCTCAGCTTGCAGCCATGACGAATCCGAAAGCGAAGAATAAAGGATCAAAGATTACACATGAACAAAAATGCACGGAGAAGAGGAAATCATCCTTTCCGAATGTGGGATCCTCTTCAGTAGTAGGAAACCAACATTTGGATGGAAAAAGAATAAAATCAGATGACCAGGTTTTGGCTGCTAAAACTCCAAAGCCTTCTGAAAAGATGATTGAATTAGACTTTGTAAGCTCGGACGAAGACTTCTAA 1224 0.433 MASHEDDLDLLLSLQDRVPDTPPASPTPGYLSDDESLNQRDKPDMSVFKNAVQDCLPYDPPKALKPTNKPVTDDSQLEKFSGLRIKNQLFTPAELKEQFSDIRFVRLSVIKNSLIGDNVSGNWATVGVLTEKGSQKTSSTGKSFSIWKIGCLDECTISLFLFGDAYQRNMQEQAGTVFALFNCAVRKDNAGNGFSLSIYSTRQIVKMGTSVDYGVCKGKRTDGMACTLVINKRHGTYCKYHKSKASEKYSTMRSELMGGNLRTAFRPKSRDHLKSEGIYLVDPLADKTNLKNSRPVKLLSTGALRKVLSNAGKVTTTPHSQGIRFLSQLAAMTNPKAKNKGSKITHEQKCTEKRKSSFPNVGSSSVVGNQHLDGKRIKSDDQVLAAKTPKPSEKMIELDFVSSDEDF* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1857 407 MobiDBLite consensus disorder prediction 340 354 - -
Vra5g1857 407 Pfam Primase zinc finger 208 253 IPR015408 GO:0005634|GO:0006260
Vra5g1857 407 MobiDBLite consensus disorder prediction 355 370 - -
Vra5g1857 407 PANTHER PROTEIN MCM10 HOMOLOG 64 385 IPR040184 GO:0003690|GO:0003697|GO:0006270
Vra5g1857 407 Gene3D - 68 242 IPR012340 -
Vra5g1857 407 MobiDBLite consensus disorder prediction 336 390 - -
Vra5g1857 407 MobiDBLite consensus disorder prediction 1 44 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1857 17 406 Core DNA Replication Machinery Family AT2G20980 53.904 1.08e-137 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1857 K10736 - gmx:100527758 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1857 5 24406356 24409785 Vra5g1857 5 24406356 24409785 ECH