Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1853 ATGGGAAGGTCTCCCTGTTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGACGATCGCCTCATAGCTTACATCAGAGCTCACGGTGAAGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGCTGCGGCAAGAGCTGCCGTCTCCGCTGGATCAACTACCTCCGCCCTGACCTCAAACGCGGCAATTTCACGGAAGAAGAAGACGACCTCATCATCAAACTCCACAGCCTCCTAGGGAACAAGTGGTCTCTCATAGCCGGAAGATTGCCGGGGAGAACGGACAATGAGATAAAGAATTACTGGAACACTCACATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAACTCACAGGCCTCTCAACGACTCTCCTCGTCACAATCAAGTCCAAGAATCAGCCGGCGCAGCCACCATAACTTTTGCTCCTAAACAAGAGGAAAACGACAACAACGTGTTGCTGGAGGTTAAGGATTCCAAAAGTCCCACATCGGAACGCTGCCCTGACTTGAACCTCGAGCTAAGCATCAGTCCTCCACATCACGAGCGGGAGGAGGGTGGCGATGAAGAGGAATCCAAGAGTATTGGGAGAAGTCTTTGCTTTGCCTGCAGTTTGGGTTTGCAAAACAGCAAAGACTGTAGCTGTGCCCTCAATGCCATCACTGCTAATGCCAACGCTTCTACTGCCACTGGCTACGATTTCTTGGGCTTGAAAACCAACCCTTTGGATTACAGAACCTTGCAAATGAAATGA 777 0.5109 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDDLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDSPRHNQVQESAGAATITFAPKQEENDNNVLLEVKDSKSPTSERCPDLNLELSISPPHHEREEGGDEEESKSIGRSLCFACSLGLQNSKDCSCALNAITANANASTATGYDFLGLKTNPLDYRTLQMK* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1853 258 CDD SANT 69 112 IPR001005 -
Vra5g1853 258 CDD SANT 16 61 IPR001005 -
Vra5g1853 258 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra5g1853 258 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra5g1853 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra5g1853 258 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra5g1853 258 MobiDBLite consensus disorder prediction 184 199 - -
Vra5g1853 258 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra5g1853 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra5g1853 258 MobiDBLite consensus disorder prediction 163 199 - -
Vra5g1853 258 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Vra5g1853 258 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 228 - -
Vra5g1853 258 SMART sant 13 63 IPR001005 -
Vra5g1853 258 SMART sant 66 114 IPR001005 -
Vra5g1853 258 MobiDBLite consensus disorder prediction 122 141 - -
Vra5g1853 258 Gene3D - 69 142 - -
Vra5g1853 258 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 228 - -
Vra5g1853 258 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1853 Vra-Chr5 24377429 24378634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1853 1 258 MYB Transcription Factor Family AT4G38620 57.785 7.55e-108 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra5g1853 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1853 K09422 - qsu:112037069 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1853 5 24377429 24378634 Vra5g1853 5 24377429 24378634 ECH