Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1850 ATGCAACAATTTATTACGGGAATTGAAGCAATGCGCAAGGCGATCTCCTTTCTCGTTCAACCGCGATGCCTCCTTCTCGTCATTGTTCTTACAATTTTCTTGATTCTCGCAATATCTGGTTCTAGACGGGTTGAAGAAAAAGTAGAAGAAGAGCCTGAAATTACTGACAGAGTATTCTTGGATGTTGATATTGATGGACAACGTCTAGGTAGGATTGTCATCGGATTATATGGCCAGGTTGTACCAAAAACTGTCGAAAATTTTAGAGCTTTGTGCACAGGGGAAAAAGGAAAGAATGCCAATGGTGTAAAACTTCACTACAAAGGAACACCATTTCATAGGATAATATCAGGTTTCATGTTTCAGGGTGGTGACATTGTCCACCATGATGGTAGAGGATATGAATCTATTTATGGTGGTACCTTTCCTGATGAAAATTTCAAGATAAAACATTCACATGCGGGTGTAGTCTCTATGGTGAATTCAGGTCCTGATTCCAATGGCTCACAGTTTTTCATTACCTCAGTGAAGACCGGTTGGTTAGATGGAGAACATGTTGTGTTTGGGAAGGTTGTCCAAGGCATGGATAACGTGTTTGCAATTGAAGGGGGTGCTGGAACCTACAATGGGAAACCCAGAAAGAAAGTAGTAATTGCAGATCTGGTCTCTGGAAAGATACCCAAGAGTCTGTCAGATGAGGAAAGATGA 708 0.4124 MQQFITGIEAMRKAISFLVQPRCLLLVIVLTIFLILAISGSRRVEEKVEEEPEITDRVFLDVDIDGQRLGRIVIGLYGQVVPKTVENFRALCTGEKGKNANGVKLHYKGTPFHRIISGFMFQGGDIVHHDGRGYESIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITSVKTGWLDGEHVVFGKVVQGMDNVFAIEGGAGTYNGKPRKKVVIADLVSGKIPKSLSDEER* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1850 235 Gene3D - 44 226 IPR029000 -
Vra5g1850 235 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 107 124 IPR020892 GO:0003755|GO:0006457
Vra5g1850 235 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 23 234 - -
Vra5g1850 235 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 23 234 - -
Vra5g1850 235 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 62 220 IPR002130 GO:0000413|GO:0003755
Vra5g1850 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 91 IPR002130 GO:0000413|GO:0003755
Vra5g1850 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 124 IPR002130 GO:0000413|GO:0003755
Vra5g1850 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 155 170 IPR002130 GO:0000413|GO:0003755
Vra5g1850 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 170 182 IPR002130 GO:0000413|GO:0003755
Vra5g1850 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 183 198 IPR002130 GO:0000413|GO:0003755
Vra5g1850 235 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 59 223 IPR002130 GO:0000413|GO:0003755
Vra5g1850 235 SUPERFAMILY Cyclophilin-like 54 221 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1850 Vra-Chr5 24358126 24362625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1850 70 218 U-box Gene Family AT5G67530 42.000 2.57e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1850 - - vra:106760817 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1850 5 24358126 24362625 Vra5g1850 5 24358126 24362625 ECH