Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1848 ATGGGCGGTGATTGGAGTTGGAGCAGGAGCAAATGGATTGGGTTGGTGGCGGCGGTGTGGATTCAAGCCATTTCCGGCAACAACTACACTTTCTCAAATTACTCCGACGCTCTGAAATCGCTCATGCATCTGACGCAAGTCCAACTCAACAATCTGTCGGTGGCCAAGGACGTCGGAAAGGCATTTGGGCTTCTTGCTGGCCTTGCTTCTGACAAATTCCCCACTTGGATCATTCTCCTCATCGGCTCCGTTGAAGGTCTCGTCGGTTATGGCGTTCAGTGGCTAGTCGTCAGCCAACGAATTCAACCCCTTCCATACTACCAGATGTGCATATTTCTCTGCCTGGGTGGCAACAGCACCACATGGATGAACACGGCGGTTCTGGTCACCTGCATCCGCAACTTCCGCCGCAACAGAGGTCCTGTTTCCGGCATTCTCAAAGGTTATGTCGGATTAAGCACCGCCATATTCACCGACCTCTGTTCCGCTCTCTTCGCGGACGACCCTGCTTCGTTTCTCATCATGCTCGCTCTCATCCCACTCGTCGTTTGCCTCTCCGGAATCTTTTTCCTCCGTGAGATTCCTCCCGCCGCCGTCCAGGATGACGAAGAGTCCACTTATTTCGGGGTCTTCAACGCCGTCGCCGTCGCAGTCGCCGTTTACCTCTTGGCCTTCGACTTCGTGCCTAACCCTAGCGCGTTTGTGTCTCGAGCTTTCTCTGTCGGTTTGCTTGTTCTGTTGGCGGCGCCGTTGGGAATCCCGGTCCACTCTTATTTGAAGGCGCGTGGGTTGGACAAGTTCAGACCGGATTTCGAGGGGCGGGGTGAGGAACCGTTGCTTCGCGGAAACGACAACGGAAATGAATGCGAGGTGCAGAGAGGAAATGTGTTAGCGGAAGACGCGGAAGCGGTGGCGGTGGGAAAGAGTAAACCGGCGGTGGGGGAGGAGCACACGGTATGGGAGGTGCTGAGAACCGTGGACTTTTGGATTCTTTTCGTGTCCTTTCTTTGCGGGGTTGGAACTGGTTTGGCGGTTATGAATAATATGGGTCAAATCGGGTTGGCGCTGGGTTATTCGGATGTGTCCCTCTTCGTGTCTTTGACCAGTATTTGGGGCTTTTTCGGTCGGATCGTCTCGGGTTCCGTTTCGGAGCACTTCATCAAGAGAGGCGGAACTCCAAGACCCCTTTGGAATGCAGGGTCTCAAATTTTGATGGGCGTGGGATACATACTGCTGGCCATGGCTATGCCAGGTTCACTTTACATAGGCTCCATTGTGGTTGGTATATGCTACGGAGTGAGGCTAGCCATCACTGTGCCAACAGCCTCAGAGTTATTTGGCCTCAAATATTATGGACTCATTTACAACATTCTAATCCTTAACCTTCCCCTTGGCTCTTTCCTCTTTTCTGGTCTGCTAGCTGGCATTCTCTATGATATGGAGGCTACTACCACCACAGGAGGAGGCAACACCTGTATTGGACCTCATTGTTACAGACTAGTATTCATTGTTATGTCTGCAGCCTGTCTTATCGGCTTCTTCTTAGACCTTCTTCTATCATTCAGAACCAAGATGCTTTACAAAACAATCTACTTCACCAAAATCTCCAACAAAAACGCACTCACATCAACTAGGCAATGA 1641 0.5155 MGGDWSWSRSKWIGLVAAVWIQAISGNNYTFSNYSDALKSLMHLTQVQLNNLSVAKDVGKAFGLLAGLASDKFPTWIILLIGSVEGLVGYGVQWLVVSQRIQPLPYYQMCIFLCLGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPASFLIMLALIPLVVCLSGIFFLREIPPAAVQDDEESTYFGVFNAVAVAVAVYLLAFDFVPNPSAFVSRAFSVGLLVLLAAPLGIPVHSYLKARGLDKFRPDFEGRGEEPLLRGNDNGNECEVQRGNVLAEDAEAVAVGKSKPAVGEEHTVWEVLRTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYSDVSLFVSLTSIWGFFGRIVSGSVSEHFIKRGGTPRPLWNAGSQILMGVGYILLAMAMPGSLYIGSIVVGICYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGILYDMEATTTTGGGNTCIGPHCYRLVFIVMSAACLIGFFLDLLLSFRTKMLYKTIYFTKISNKNALTSTRQ* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1848 546 Gene3D MFS general substrate transporter like domains 5 203 IPR036259 -
Vra5g1848 546 Gene3D MFS general substrate transporter like domains 320 525 IPR036259 -
Vra5g1848 546 SUPERFAMILY MFS general substrate transporter 8 524 IPR036259 -
Vra5g1848 546 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 9 536 - -
Vra5g1848 546 CDD MFS_Mch1p_like 10 512 - -
Vra5g1848 546 Pfam Nodulin-like 11 255 IPR010658 -
Vra5g1848 546 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1848 Vra-Chr5 24350763 24353549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1848 11 539 Nodulin-like Gene Family AT4G34950 67.572 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1848 - - gmx:100813607 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1848 5 24350763 24353549 Vra5g1848 5 24350763 24353549 ECH