Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1844 ATGAGCGACAGTGAGAAGCAGAGGGTAACGGGAAAGGTCAAGTGGTTCAATGATCAGAAGGGATTTGGCTTCATAACCACCGATGACGGCGGCGAGGATCTCTTCGTCCACCAGTCCTCCATCCGATCCGACGGTTTTCGCAGCCTCGCCCTAGGAGAATCCGTCGAGTTCCTCATCGACTCCGATTCCGAAGGCCGCACCAAGGCCGTCGACGTCACCGGCCCTGACGAATCGCCCGTGCAGGGCACCCGCGGTGGTGGAGGAGGGGGAAGAGGTGGATACGGAGGCGGGGGTGGTGGAAGAGGTGGCTATGGCGGCGGAGGACGCGGAGGACGAGGTGGATATGGAGGCGGTGGCGGATATGGTGGCGGTGGCTATGGCGGAGGCGGTGGGTATGGGGGAGGTGGTGGTGGTGGAGGGGGTTGCTATAAGTGTGGGGAGACGGGTCACATGGCGAGGGACTGCAGCTTAGGTGGTGGCGGTGGTGGAAGGTACGGAGGAAGTGGTGGCGGAGGTGGCGGTGGAAGCTGCTACAACTGTGGGGAGTCTGGGCATTTTGCGAGGGACTGCCCTTCGAATGCGCGTTGA 588 0.6241 MSDSEKQRVTGKVKWFNDQKGFGFITTDDGGEDLFVHQSSIRSDGFRSLALGESVEFLIDSDSEGRTKAVDVTGPDESPVQGTRGGGGGGRGGYGGGGGGRGGYGGGGRGGRGGYGGGGGYGGGGYGGGGGYGGGGGGGGGCYKCGETGHMARDCSLGGGGGGRYGGSGGGGGGGSCYNCGESGHFARDCPSNAR* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1844 195 PANTHER COLD SHOCK PROTEIN 1 1 193 - -
Vra5g1844 195 Pfam Zinc knuckle 176 192 IPR001878 GO:0003676|GO:0008270
Vra5g1844 195 Pfam Zinc knuckle 141 156 IPR001878 GO:0003676|GO:0008270
Vra5g1844 195 ProSiteProfiles Zinc finger CCHC-type profile. 142 155 IPR001878 GO:0003676|GO:0008270
Vra5g1844 195 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Vra5g1844 195 Pfam 'Cold-shock' DNA-binding domain 10 74 IPR002059 GO:0003676
Vra5g1844 195 ProSiteProfiles Zinc finger CCHC-type profile. 177 192 IPR001878 GO:0003676|GO:0008270
Vra5g1844 195 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Vra5g1844 195 SUPERFAMILY Retrovirus zinc finger-like domains 134 193 IPR036875 GO:0003676|GO:0008270
Vra5g1844 195 Gene3D - 172 195 - -
Vra5g1844 195 Gene3D - 138 164 - -
Vra5g1844 195 SMART c2hcfinal6 176 192 IPR001878 GO:0003676|GO:0008270
Vra5g1844 195 SMART c2hcfinal6 141 157 IPR001878 GO:0003676|GO:0008270
Vra5g1844 195 MobiDBLite consensus disorder prediction 63 99 - -
Vra5g1844 195 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Vra5g1844 195 SUPERFAMILY Nucleic acid-binding proteins 7 74 IPR012340 -
Vra5g1844 195 Gene3D - 1 85 IPR012340 -
Vra5g1844 195 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 193 - -
Vra5g1844 195 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Vra5g1844 195 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Vra5g1844 195 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Vra5g1844 195 SMART csp_8 10 75 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1844 Vra-Chr5 24322040 24322977 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vra5g1844 CSD 2e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1844 - - gmx:100820359 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1844 5 24322040 24322977 Vra5g1844 5 24322040 24322977 ECH