Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1840 ATGGAGAGAATGGATGATCTTCGGCACTGTCTATTAGAATTTCTTATTCGGAGCCCCTTTCCAGACCCAGAAGAGAAAGATAATATGGTCAAAAATATGCTTAGAGTTTTTTCCATGTCTAAGTCTAATCATGATTCCGGTTTTAAAAGGATATTCCTTCTTAAAATCATTCAAAATGACCTTTCTTCTCCGACCATCAACATCTCCGAAAACATTCTCAAAATCCTCGAACATCTTGAAGAACTCTTTCTTTGCGATGCCTTTCCGGTTCCTGCCACCTTGAGTGCCGCCTACTGCGCCGTGGCGGTGGAATGCACAATCAGGTATCTGCATCTGAATCTTCACCACGATCTTCTCTACCTCCGCGCAGTGAAGAGGATATGGCAAGTTAGGATTCCGCATCAGAATAGTTCCGGTTCCAGAGAAGGGAGTCTTCCATTCTCGGTGGAGTTGGAGCAATGGAAAAAGGACATCGAAACTTCCCTTTCGGATTCACAAATGAGGAAGCGATTGGCTTCCATAGATACTAGAGGGGATGCCATTATCAAGCTCAGGGCGTTTTTCGACGAAGCCTGTACCGTTTTGGGTTCTCCTTTTGCTCAGTTAACAGTTACAGAACACACAAATAAGGCCCAAGAAAACGAAGAAAGAGGGGATTGCATTTATGGGAAGATGCAAGCCTTGGCTAAGGATTCTTTAACAACAACTATGGAAGATAACGAGGAGACATATTTATCCTGCTCCACGGATATAAGTGATGATGAGGTGGCTCAAGTGAAAAATGCAGCACGTGTTGATGAGGAGGATTCAGAAGATAATCTGCAAGGTGGAACATCAAGATTTAATTTACGTAGTCCCAATAAGAAAAAACATTCTCCATTGAAAATCTATAAATCAAACGCCTTTACAAAAAGAAGAAAAACAAAAAGGTGGAGTCACTTAGAAGAAGAGACACTTAAGAATGGTGTAGAGAAGTTTGGCAGGGGAAATTGGAAGCTAATCCTAAATGCTCACAAGGATATATTTGAAGAGAGAACCGAAGTTAATTTGAAGGACAAATGGAGAAATATAACACGCTATGGAGCAAATAAATCATAG 1098 0.4117 MERMDDLRHCLLEFLIRSPFPDPEEKDNMVKNMLRVFSMSKSNHDSGFKRIFLLKIIQNDLSSPTINISENILKILEHLEELFLCDAFPVPATLSAAYCAVAVECTIRYLHLNLHHDLLYLRAVKRIWQVRIPHQNSSGSREGSLPFSVELEQWKKDIETSLSDSQMRKRLASIDTRGDAIIKLRAFFDEACTVLGSPFAQLTVTEHTNKAQENEERGDCIYGKMQALAKDSLTTTMEDNEETYLSCSTDISDDEVAQVKNAARVDEEDSEDNLQGGTSRFNLRSPNKKKHSPLKIYKSNAFTKRRKTKRWSHLEEETLKNGVEKFGRGNWKLILNAHKDIFEERTEVNLKDKWRNITRYGANKS* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1840 365 CDD SANT_TRF 309 359 - -
Vra5g1840 365 Gene3D - 311 365 - -
Vra5g1840 365 Pfam Myb-like DNA-binding domain 308 357 IPR001005 -
Vra5g1840 365 ProSiteProfiles Myb-like domain profile. 303 358 IPR001005 -
Vra5g1840 365 SUPERFAMILY Homeodomain-like 310 363 IPR009057 -
Vra5g1840 365 PANTHER MYB TRANSCRIPTION FACTOR 261 360 - -
Vra5g1840 365 PANTHER MYB TRANSCRIPTION FACTOR 6 264 - -
Vra5g1840 365 MobiDBLite consensus disorder prediction 264 292 - -
Vra5g1840 365 PANTHER MYB TRANSCRIPTION FACTOR 261 360 - -
Vra5g1840 365 PANTHER MYB TRANSCRIPTION FACTOR 6 264 - -
Vra5g1840 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 303 362 IPR017930 -
Vra5g1840 365 SMART sant 307 360 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1840 Vra-Chr5 24296740 24298557 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1840 92 357 Single Myb Histone (SMH) Gene Family AT1G15720 27.244 1.90e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra5g1840 Myb_DNA-binding 1.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1840 - K11111 vra:106760502 729.554