Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1838 ATGGATGATCTTGGACAGTGCCTGTTGGAATTCTTTGTTCGGAGCCGCCTCCCAGACACTCGAATCGTCTCCATGTCCGATCCCGATTCCCGTTTCAAGAAAACTTTTCTTCTCAAGATTCTTCAAAACCACCTATCTTCTGATCGCATTAACATTACTGAAAACTTTCTCAGAATCCTCGAGCATCTTGAGGAACTCTTTCGCTCCGATGGCTTTCCGATCACTGCCACAATGAGTGCCGCTTACTGTGCCGTGGCGGTGGAGTGCACGATCAAGTATTTGCGTTTGAATCTTTACAGCCACAATCCTCTCTACCTCCGCGCCGTGAACAGGATATGGCGGAATAGGATTCCGTATATGAATAGTTCCGGTTCCAGAGAAGAGAGCCTTCTGTTCTCAGTAGAGTTGGAGGGGTGGAGAAGGGATATTGAAACTTCCCTTTTAGATTCACAAGCGAGGGAGCGATTGGCCGCAGTAAAAACTAGAAGGGATGCCATTATCAAGCTCAGGGCGTGTTTGGAAGAAGCCCTTACCGTTTTGGGTACTCCTCTTGTTCCGTTAACAGCTACCGAGCACACGAATAAGACCCAACGAAACCAAGAAGGAGGTCACACCGAGCACACAAATAAGGCTCAACTAAACGAAGAAGGAGAAGTTCAAAAGTGTAACAGTGCCGCCGCTGAGAATTTGTATTTACCTACCACTGTTGAAGTTGAAAAGATTGGAGATTGCATGTCTGGGGTTGAAAAGATTGGGGATTGCATTTCTGAGGAGCTGTTGGCTCAGGATTCTTTACCAAAAATTGTTGAAGTTGAAAAGGTTCGAGATTGCATTTCTGGAGACTTGCAAGCATTGGCTAAAGATTTTTTAACAACAACTATGGAAGATAATGAGGAGGTACAGAAGACTATAGAGGCAGATTTATCTTGCCCACAAGATATAAATGATAATAAAACTGATCCAGTGGAAAATGCCGCACGTGTTGACGAGCGAGATTCGGTAGATAATCTGCAGGGTGGAACATCAAGATTTAATTTGCAAAGTCCCAAGAGGAGAAAACATTCTCCATTGAAAATCTATAAACCAACCGTCGTTACAAAAAGGAGAAAAATAAAAAGGTGGACTCAGTTAGAAGAAGAGACACTTAAGAATGGCGTAGAGACGTTTGGCATGGGAAATTGGAAGCTAATCCTAAATGCTCACAAAGATATATTTGAAGAGAGAACCGAAGTTGACTTGAAAGACAAATGGAGAAATATGTCGCGGCATGGCTGCAAATGA 1281 0.4356 MDDLGQCLLEFFVRSRLPDTRIVSMSDPDSRFKKTFLLKILQNHLSSDRINITENFLRILEHLEELFRSDGFPITATMSAAYCAVAVECTIKYLRLNLYSHNPLYLRAVNRIWRNRIPYMNSSGSREESLLFSVELEGWRRDIETSLLDSQARERLAAVKTRRDAIIKLRACLEEALTVLGTPLVPLTATEHTNKTQRNQEGGHTEHTNKAQLNEEGEVQKCNSAAAENLYLPTTVEVEKIGDCMSGVEKIGDCISEELLAQDSLPKIVEVEKVRDCISGDLQALAKDFLTTTMEDNEEVQKTIEADLSCPQDINDNKTDPVENAARVDERDSVDNLQGGTSRFNLQSPKRRKHSPLKIYKPTVVTKRRKIKRWTQLEEETLKNGVETFGMGNWKLILNAHKDIFEERTEVDLKDKWRNMSRHGCK* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1838 426 SUPERFAMILY Homeodomain-like 373 424 IPR009057 -
Vra5g1838 426 SMART sant 370 423 IPR001005 -
Vra5g1838 426 PANTHER MYB TRANSCRIPTION FACTOR 5 423 - -
Vra5g1838 426 Gene3D - 374 426 - -
Vra5g1838 426 ProSiteProfiles Myb-like domain profile. 366 421 IPR001005 -
Vra5g1838 426 PANTHER MYB TRANSCRIPTION FACTOR 5 423 - -
Vra5g1838 426 CDD SANT_TRF 372 422 - -
Vra5g1838 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 366 425 IPR017930 -
Vra5g1838 426 Pfam Myb-like DNA-binding domain 373 419 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1838 Vra-Chr5 24284738 24287211 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1838 74 420 Single Myb Histone (SMH) Gene Family AT1G15720 26.781 3.73e-22 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra5g1838 Myb_DNA-binding 8.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1838 - K11111 var:108331610 511.916