Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1828 ATGGTGCTCCTTGTTCCTACGCTGAAGTGGATAATCTTTTTCGCTCTCTTCATTTTTTCAGATTGCTTCGATCCGTTGGATCCAACTGGGAACATTTCCGTAACTTTTGACATTTACCAACGTACAGATAATGGATATCTGGCAAGAGTGACGCTTCAGAACTACCATCAGTATCGGCATGTGGAGAAACCAGGGTGGAAGCTAGGATGGAAATGGGCTAAGAATGAAGTGATATGGTCAATGAGTGGTGCCATAGCAACTGACAGAGGGAATTGCTCGTCTTACAGTGGCTCTCAGATGCCACATTCCTGCAAGAATGATCCCATCATAGTTGATCTCTCTCCGGAGGTCTCAAAAAACAGGTCAGAGCATTGTTGCCGTGGTGGCCTCCTCTCTGCCTGGTCTATTGATCCTTTCAATGCATTCTCTTCATTTGAACTTGAAGTGCGCAACGTGGGAGATAACCCACTTGGACAAGCACCTAACAATCTTACATTGATGGCCCCAGGTCCTGGTTACACTTGTAGCCCCCTTCTTGACACTGATCCCTCAGTGTCCTCAGATTTTGGGGGACTAAGACAAGTTCCTGTTCTCAGAACTTGGAAATCAACATGTGCATACTCCAGTTTCTTAGCAAACACATTACCGGTATGCTGTGTTTCCCTCTCATCATTTTACAACCCCATCGTCACATCTTGCCGAGATTGCAGTTGCGGATGCAGAGAAGCAGATAAAAGTACTGCGTCTTGCATAAGGCCTGATTCATTGTCACGGTCCAATGAGGACAACACGATTGAAATTGTTGAATGCACCGACCACATGTGCCCCGTTCGAGTCCATTGGCATTTCAAGAACAACTATATGAACCAATGGAGAGTAAAGCTTACAATTTCTAACTACAATTACAACAAAAACTACTCCAACTGGAACTTGCTGGTCCAACATCCTGGTTTCACTCAAAAAACATCAGCCTACAGTTTCAACAGCACTAAACTTCCCACTCTCGGAATCCAAGATGGAGTTTCCCTGTTTTGGGGAATAGATTATTACAACAATGAGCTCTTGCATTCTGATAAGGCTAAAGTGGGTGTTGTGACAACAGAAATACTATTGGATAAAGATCCAAATTCTTTCACAATAAGTAATGGATGGGCATTTCCTAGAAGAATATATTTCAATGGTGACAACTGCGAAATGCCTTTACCTGACAGGTTTCCCATGCTGCCCAATCGTAGCTCTACTCTAGCACCTTCTTCTTGTGGTTTTATTCTCTTATTTATCCTTTTGTTTCTTCCCCTATTACTCCTTTAG 1311 0.4333 MVLLVPTLKWIIFFALFIFSDCFDPLDPTGNISVTFDIYQRTDNGYLARVTLQNYHQYRHVEKPGWKLGWKWAKNEVIWSMSGAIATDRGNCSSYSGSQMPHSCKNDPIIVDLSPEVSKNRSEHCCRGGLLSAWSIDPFNAFSSFELEVRNVGDNPLGQAPNNLTLMAPGPGYTCSPLLDTDPSVSSDFGGLRQVPVLRTWKSTCAYSSFLANTLPVCCVSLSSFYNPIVTSCRDCSCGCREADKSTASCIRPDSLSRSNEDNTIEIVECTDHMCPVRVHWHFKNNYMNQWRVKLTISNYNYNKNYSNWNLLVQHPGFTQKTSAYSFNSTKLPTLGIQDGVSLFWGIDYYNNELLHSDKAKVGVVTTEILLDKDPNSFTISNGWAFPRRIYFNGDNCEMPLPDRFPMLPNRSSTLAPSSCGFILLFILLFLPLLLL* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1828 436 PIRSF COBRA 1 436 IPR006918 GO:0010215|GO:0031225
Vra5g1828 436 PANTHER COBRA-LIKE PROTEIN 13 430 - -
Vra5g1828 436 Pfam COBRA-like protein 46 208 IPR006918 GO:0010215|GO:0031225
Vra5g1828 436 PANTHER PROTEIN COBRA 13 430 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1828 Vra-Chr5 24234036 24236231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1828 21 436 COBRA Gene Family AT3G29810 48.815 2.93e-141 409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1828 5 24234036 24236231 Vra5g1828 5 24234036 24236231 ECH