Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1826 ATGGGTATTCGTCTGCCAATATTTATGGCTCTTCATGCGAACAAGATATTCAAGTGGCAGCAGCATCTGCATAACAGAAACCATTCGAACGTTCCAAAGGGTCACATAGCAGTGTATGTGGGAGAGGCTCAAAAGAAGAGGTTCGTGGTTCCGATATCTTACTTGAACCATCCTTCGTTTCTTGATTTGCTAAACCGAGCGCAGGAAGAGTTTGGCTACAATCATCCAATGGGAGGTCTCACCATCCCTTGCAAAGAAGAGGCTTTCATCTCTCTCACCTCTCAATTACGTTATTCCTGA 300 0.4467 MGIRLPIFMALHANKIFKWQQHLHNRNHSNVPKGHIAVYVGEAQKKRFVVPISYLNHPSFLDLLNRAQEEFGYNHPMGGLTIPCKEEAFISLTSQLRYS* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1826 99 Pfam Auxin responsive protein 16 94 IPR003676 GO:0009733
Vra5g1826 99 PANTHER SMALL AUXIN-UP RNA-RELATED 1 96 - -
Vra5g1826 99 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 96 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1826 Vra-Chr5 24222562 24223305 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1826 30 89 Calmodulin-binding Proteins AT5G20810 53.333 8.93e-16 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1826 K14488 - gmx:102663761 199.519