Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1825 ATGAAGAAAAGCAATCTCCGAAGCGCCAAGGTCCAATCGCCAAACCACGTTCAATTCAGTTCCAAGACGCCGGAGAAAATGTCGCAACGGAACCGCAACCGCGGCGTCGCGCTCTCTGTCACAGACATAAAAAAAGTTGGCAAGGGTTTGCAGGATCGGAAGGGACGTGGTGAAACGACGTCGGCACGGCCGCAAAGCAAGAATGTGAGGAGGCAGATCTTACAGCGGTCTTCTTCTCCGAGTAAATCCAAGAGTACTAACGATGATCCCTCCAAGCTTCCCGAAAAATTTGAAATTTTGGATCAGTTCTTCGATCGCTTGGACACTTTAATTTCAATGTTCCGTCTGAAAGGGAAGACGCCATCTTTTACGGAAATCAGTTCTAGAATTGAATCTTTAACAGACAGGAGGTTTACTCACAGCCATCTAGCGCAGTTGAAATTTATCTTGCCTGATGCTATTGTTCTGAAGAAGTTTCTAGTGCATGATGAACGGACCAGTTGTATGAAGCCGGATATTCATATTTCTTTAGCCCCTGAGGCGGTAGAGTCTGATGCGAAGATGCCCCCTGATCAACGTGGGATAGTTTCGTTGAAGAAGTTGTTTCACGCACGGCTTATAGAATTTTGGGACTCTCATCCTGAGGGTGATGAAATTCCAGAAGGAGCTTTGCCAGAGCCATTCAATGGCCCAAAGAAAGTCAATACTTTAGACACGTTGGAAACTCGTCTCCCAACAAAATTATCACTCTGCATGCGCTATAATGACATAGTCAATAATGTAGAGTCTGCTAGCATAGATGAAAAGATGTCTACACCTGTAGAGACATCAATTGAATTGCCTAATGAGCATCTGGCAGCAGCTTCTCACATTGCTCCATCCTTTAGAGCAAGATTTTCTTTGAAATTTAAACAAAATTTAGCAGATACCGTACAGAAAATTTCTCAGGTAGATTCGGTACAACCCTCCCCAGCTAAGTCGGCTTCACAAGCAGCTAGCAGTGAAAATTGTTCAACAATATGTTCCTCTCTGGAATCATCCAGTGCTCCCGCTCCCACTGCCACTCCAAGGAAAACCGTCGACTACACAGAAAACGAAGATGCTTCTCCCAAGAGGACTGATGCCATGTCAACTCCAGCTAAACTTGTTTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCCTTGCGTTCACCCAAAAGATGTCTTATGAGCCCAGATGACCACCCAACAAGTTCTTTGAACAAGTTAGCTAGGCGGCCACCTCGCTCAAGATCATTGATATTTGACACCCCAGTGAAGAATGATGAGGTTGTGAATGAAGACAATGCCGGTGGATTACCAATAGATGATGATATTTTTGAGATCCTCCCAGGAAAACTTATCCAATCGATTAGAGAAAAGGAAAGAATGGCAATGGAGGAAAGAGACCCAGCTATCACGCAAGCAAAGAAACGGAAAAAAATTATAGCTAACCTCCCTAAGCTCTTTGACATGATTCGCCTCTTGCTTCGACAGCGGAATTGTATTACTAAAATGGAGCTTGTAAGCAAGATAATCTCAAACCACAGTGATATTGTTGACATAAGTGAAGTTGAAGAGCAGCTAGATTTGTTGCAAGAACTAGCACCGGAATGGATTTCTGAGAAGCAGGTCTCCAGTGGGGATTTGCTCTTATTCATAAACAAAATGTTGAACCCTGAAGCCATTCGAGCATCTCTTGAAGAAGCGGCATAG 1737 0.441 MKKSNLRSAKVQSPNHVQFSSKTPEKMSQRNRNRGVALSVTDIKKVGKGLQDRKGRGETTSARPQSKNVRRQILQRSSSPSKSKSTNDDPSKLPEKFEILDQFFDRLDTLISMFRLKGKTPSFTEISSRIESLTDRRFTHSHLAQLKFILPDAIVLKKFLVHDERTSCMKPDIHISLAPEAVESDAKMPPDQRGIVSLKKLFHARLIEFWDSHPEGDEIPEGALPEPFNGPKKVNTLDTLETRLPTKLSLCMRYNDIVNNVESASIDEKMSTPVETSIELPNEHLAAASHIAPSFRARFSLKFKQNLADTVQKISQVDSVQPSPAKSASQAASSENCSTICSSLESSSAPAPTATPRKTVDYTENEDASPKRTDAMSTPAKLVSTPIRLMSATPALRSPKRCLMSPDDHPTSSLNKLARRPPRSRSLIFDTPVKNDEVVNEDNAGGLPIDDDIFEILPGKLIQSIREKERMAMEERDPAITQAKKRKKIIANLPKLFDMIRLLLRQRNCITKMELVSKIISNHSDIVDISEVEEQLDLLQELAPEWISEKQVSSGDLLLFINKMLNPEAIRASLEEAA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1825 578 SMART CDT1_2 93 226 IPR014939 -
Vra5g1825 578 Pfam DNA replication factor CDT1 like 93 186 IPR014939 -
Vra5g1825 578 MobiDBLite consensus disorder prediction 399 421 - -
Vra5g1825 578 CDD Cdt1_m 92 229 IPR014939 -
Vra5g1825 578 SUPERFAMILY "Winged helix" DNA-binding domain 88 228 IPR036390 -
Vra5g1825 578 MobiDBLite consensus disorder prediction 7 36 - -
Vra5g1825 578 MobiDBLite consensus disorder prediction 342 377 - -
Vra5g1825 578 PANTHER DNA REPLICATION FACTOR CDT1 9 578 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vra5g1825 578 CDD Cdt1_c 451 575 IPR032054 -
Vra5g1825 578 MobiDBLite consensus disorder prediction 61 87 - -
Vra5g1825 578 Gene3D - 451 578 IPR038090 -
Vra5g1825 578 Pfam DNA replication factor Cdt1 C-terminal domain 461 552 IPR032054 -
Vra5g1825 578 MobiDBLite consensus disorder prediction 1 93 - -
Vra5g1825 578 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1825 Vra-Chr5 24216638 24220024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1825 9 576 Core DNA Replication Machinery Family AT2G31270 39.420 4.85e-94 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1825 K10727 - gmx:100778818 712.22