Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1823 ATGTATAAATATATTGTCTTCCTTCACAACACTCAACTCATTTGCAAACTCACCGCAAAACTTAGCTACGTAGTACTTATGAATTTTAGCTTGCTCTTTGAGACATTTGAAATGGGTTTCCGTTTCCCAGCAATTAGAAGGGCTTCATTTACTGGTAGCCAATCATCTTCAAAAGCTGTAAACATGGCAAAGGGATATTTTGCAGTGTCTGTGGGAGAGAGAATGAAACGGTTTGTGATCCCCATGTCATACTTGAACCAACCTTCATTTCAAGACTTGCTGAGTCAAGCAGAGGAAGAATTTGGATACAAACATCCAATGGGTGGTCTCACAATTCCTTGCACGGAAGATGTCTTTTTGCTTGTTATATCTAGCTTGAATGGGCTCTAA 390 0.3949 MYKYIVFLHNTQLICKLTAKLSYVVLMNFSLLFETFEMGFRFPAIRRASFTGSQSSSKAVNMAKGYFAVSVGERMKRFVIPMSYLNQPSFQDLLSQAEEEFGYKHPMGGLTIPCTEDVFLLVISSLNGL* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1823 129 Pfam Auxin responsive protein 48 126 IPR003676 GO:0009733
Vra5g1823 129 PANTHER AUXIN-INDUCED PROTEIN 6B 38 127 - -
Vra5g1823 129 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 38 127 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1823 Vra-Chr5 24210357 24210969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1823 46 124 Calmodulin-binding Proteins AT4G34750 37.975 1.41e-15 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1823 K14488 - gmx:113002386 143.665