Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1816 ATGGCCGCGTCTAATCTCTCCACCCTGTGCTCCTCTTCACACTCCAAAACATCTTCTTTCCCTTTTTTCAACACTCAAAGCTTCAGCGTCAACAGTAACACTTTTTTTCTCAACAATACAAACTCCTTTCAAACCCTTCTATCTCATTCCACCCACAATCCCCGCTATACTCTGCCTCTTCCATGCACCAAAACCACAAACACTTTCGCCTCTGTCAATGATGACGAAAAGCCCCGCGAAGAGTGCGGCGTTGTGGGCATCTACGGCGACCCAGAAGCCTCCCGTCTCTGCTCCCTCGCCCTCCACGCCCTCCAGCACCGTGGCCAGGAAGGCGCCGGCATCGTCGCCGTCCACGACAACCTCTTCCACTCAGTCAACGGTGTTGGCCTCGTTTCTGACGTCTTCAATGAGGCTAAGCTCTCTGAGCTGCCCGGTTCCTGCGCCATTGGCCACGTCCGCTACTCCACCGCTGGCCACTCCAAGCTCGTGAACGTCCAACCCTTCGTCGCCGGCTACCGCTTCGGCTCCGTCGCCGTCGCGCACAATGGAAACTTCGTGAACTACCGCTCCCTACGCGCCAAACTGGAAGACAACGGGTCCATCTTCAACACGACCTCCGACACCGAGGTCGTGCTCCACCTGATCGCCACCTCCAAACACAGACCTTTCCTACTCAGAGTCGTGGATGCCTGCGAGAATCTGAAGGGGGCGTACTCCCTGGTGTTCCTCACGGAGGACAAGCTGGTGGCCGTGAGGGACCCCTTCGGGTTCCGGCCTTTGGTGATGGGAAGGAGAAAGAACGGCGCTGTGGTTTTCGCCTCGGAGACATGCGCGCTGGATTTGATCGACGCGACGTATGAGAGAGAGGTGAACCCGGGTGAGGTTGTGGTGGTGGACCACACTGGAATCCAATCCCTCTGCCTCGTGACTCATCAGGAGCCAAAGCAATGCATCTTCGAGCACATATACTTCGCACTTCCCAACTCTGTTGTCTTCGGGAGGTCTGTGTACGAGTCCAGGAGAAAATTCGGGGAAATACTGGCCACTGAGAGCCCCGTTGAGTGCGACGTTGTGATTGCGGTTCCCGATTCTGGGGTGGTGGCTGCGCTTGGCTACGCTGCAAAAGCTGGGGTTCCCTTTCAGCAGGGGTTGATAAGGTCGCACTATGTGGGGAGGACTTTCATCGAGCCCTCGCAGAAAATAAGAGATTTTGGAGTGAAGCTGAAGCTGTCTCCGGTGCGTGGCGTGCTTGAAGGGAAGAGGGTTGTGGTGGTGGATGATTCCATTGTGAGGGGCACCACATCTTCCAAGATTGTGAGGCTGATAAAGGAGGCGGGTGCTAAGGAGGTCCACATGAGGATTGCGTGTCCACCCATTGTTGCGTCATGTTACTACGGTGTGGACACCCCCAGTAAGGAAGAATTGATTTCCAACAGGATGGATGTGGAGGAAATAAGGAAGTTCATTGGTTCTGATTCCCTCGCTTTTCTTCCCTTGGACACGTTGAAGACTTTGTTGGAGGATGATGCCCCTAACTACTGCTATGCTTGCTTCTCCGGGAAATACCCTGTTCAGCCAGACGAACTTAAACCCAACACCCTCAATGAGTTCGATTGGGACGATGCTTTCAATGGCAGTTTGAAACCTATTGAGGACGAGGTTTGGGCTAGAAACCAGGAGGCTGGGAATAACATTCTTAGTGTCTGA 1707 0.5431 MAASNLSTLCSSSHSKTSSFPFFNTQSFSVNSNTFFLNNTNSFQTLLSHSTHNPRYTLPLPCTKTTNTFASVNDDEKPREECGVVGIYGDPEASRLCSLALHALQHRGQEGAGIVAVHDNLFHSVNGVGLVSDVFNEAKLSELPGSCAIGHVRYSTAGHSKLVNVQPFVAGYRFGSVAVAHNGNFVNYRSLRAKLEDNGSIFNTTSDTEVVLHLIATSKHRPFLLRVVDACENLKGAYSLVFLTEDKLVAVRDPFGFRPLVMGRRKNGAVVFASETCALDLIDATYEREVNPGEVVVVDHTGIQSLCLVTHQEPKQCIFEHIYFALPNSVVFGRSVYESRRKFGEILATESPVECDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRGVLEGKRVVVVDDSIVRGTTSSKIVRLIKEAGAKEVHMRIACPPIVASCYYGVDTPSKEELISNRMDVEEIRKFIGSDSLAFLPLDTLKTLLEDDAPNYCYACFSGKYPVQPDELKPNTLNEFDWDDAFNGSLKPIEDEVWARNQEAGNNILSV* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1816 568 Pfam Phosphoribosyl transferase domain 340 453 IPR000836 -
Vra5g1816 568 Gene3D - 341 505 IPR029057 -
Vra5g1816 568 Pfam Glutamine amidotransferase domain 165 279 IPR017932 -
Vra5g1816 568 CDD PRTases_typeI 344 455 IPR000836 -
Vra5g1816 568 CDD GPATase_N 82 332 IPR035584 -
Vra5g1816 568 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 35 552 - -
Vra5g1816 568 Hamap Amidophosphoribosyltransferase [purF]. 81 522 IPR005854 GO:0004044|GO:0009113
Vra5g1816 568 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 82 305 IPR029055 -
Vra5g1816 568 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 35 552 - -
Vra5g1816 568 SUPERFAMILY PRTase-like 317 526 IPR029057 -
Vra5g1816 568 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 82 301 IPR017932 -
Vra5g1816 568 TIGRFAM purF: amidophosphoribosyltransferase 82 523 IPR005854 GO:0004044|GO:0009113
Vra5g1816 568 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 82 523 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1816 Vra-Chr5 24162351 24164519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1816 74 557 PRT Gene Family AT2G16570 79.381 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1816 K00764 - gmx:548065 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1816 5 24162351 24164519 Vra5g1816 5 24162351 24164519 ECH