Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1815 ATGGACGAGGAGGAACGTGACGAAGGAAGTTCTGTCCCGGGGGTTGTTGCCGCCGGCCAAACCCCAGACCAACTCGTCTCCAGGGCCATAGCCCCCGTCAAGAAGGAATTCCTCCGGCCCCCTCCGGTTCGGTCTGCCGCTCCAGACGACGACGTTTCCATTCCCAACGAAAATAAGACCTCTGTTCTGGCCAAGGAGAAGAAGTCTAAGCGCCAACTCAAACGCGAACGTCGTCAGGGACAAAAGTCGGCACGAAACCTATGTCCAGAAATTGCGAGGACGGGGGATGTTAGTTCGTGTCCGTATAAAGACAAATGTCGTTTCAGCCATGATTTGGAAGGCTTCAAGGCGCAGAAACCGTCTGATCTAGAAGGACAATGCCCGTTCGTTAAATCTGGAGTTTCTTGCCCTTATGGCTTAGCGTGTAGATTTTCGAGTACGCATGAAGGTGGTGTGCCTTCTGGCGTTCGAAATGGTCCGAAGAATAGTTCCGAGGTGAATGGATTGAGCAAGGAGGTTCAAAAGCTTTTGTGGAAAAATAAGATGACCTTCTCGAAGGCAGATGCCAAACTCAAAAGTGTCGGCCTCTTGGGATCGTCTAAGTCAATAAGGAATGACTTGGAAAATAAAGAGGGAGTTGGCACTGGTTCAAATAAGTGTGATCATTCTGATGACAGCGGCTCTTGTGTTGTAACGTCCGACTCAGGTTCTAAGTTGGACTGCCCTGCTGAAGTTATGAAAGATGATGACAATGACATATATGGAAAATCTGAATCTGATGAACTTTGTCCCCTGAAGCGAAGAAAAACTGAAGAAAACTGTGGTCCTGATGAGGCACAAAATGAAGAGAATCGTGGTCCTAAGGAATCAAAAAATGAAGGTGTTACTGAGAAAATTGTTGAAAGGAGATGCACGGAATCTGAAGCTGATGCTATAGTCCCGGAAACTGATCTAAGCCTGAAGCATCACTCGCGTGAAAAGAAGCTTATTGATTTCAGGGGGAAGTTGTATCTTGCACCCTTAACTACTGTTGGCAATCTCCCTTTCCGGAGAGTTTGCAAAGAATTAGGTGCTGATGTGACCTGTGGTGAAATGGCAATGTGCACGAATCTTTTGCAGGGTCAAGCGTCAGAATGGGCATTGCTAAGACGACATTCATCTGAAGATTTTTTTGGTGTACAAATCTGTGGGGCATATCCAGATACTGTGGCACGAACAGTTGAACTAATAGAGCAAGAATGCACTGTAGATTTTATTGACATAAATATGGGTTGCCCTATTGACATAGTTGTGAATAAGGGTGCTGGATCAGCTCTTTTAACAAAACCAACGCGGATGAAAAGTATCGTAGAAGTAGCTTCGGGTACAGTGGATAAGCCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGGAAGAACCGCATTGATTCTCTGATAGAAGACATTGGTTCTTGGGGAGCCAGCGCGGTGACAATACATGGTAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGACTGGGACTATGTATACCAGTGTGCCAGGAAAGCCCCTACTACATTGCCAGTAGTGGGGAATGGAGACGTGTTTTCATTTGTAGACTGGAACAACCACAGAACTGAATGCCCGGAACTTGCTACGGACATGATTGCTCGTGGTGCACTTGTTAAACCTTGGATATTTACGGAGATCAAGGAACAAAGACATTGGGACATCAGTTCTGGGGAGCGACTAAATATTCTCAAGGATTTTGTGAATTTTGGTCTGGAACACTGGGGTTCTGACACAAAAGGGGTTGAGACAACAAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGCAGGTATATACCCGTTGGTCTTTTGGATGTAGTTCCACAACGGTTAAACTGGCGTCCACCTTCTTACTATGGGCGTGATGAGCTTGAGACACTAATGGCCTCAGACTCTGCTGCTGATTGGATACGAATATCAGAGATGTTACTCGGCAAGGTTCCTGATGACTTTAGATTTGCACCAAAGCATAAATCAAACGCATATGATAGAGCTGAAAATGGTTAA 2064 0.4578 MDEEERDEGSSVPGVVAAGQTPDQLVSRAIAPVKKEFLRPPPVRSAAPDDDVSIPNENKTSVLAKEKKSKRQLKRERRQGQKSARNLCPEIARTGDVSSCPYKDKCRFSHDLEGFKAQKPSDLEGQCPFVKSGVSCPYGLACRFSSTHEGGVPSGVRNGPKNSSEVNGLSKEVQKLLWKNKMTFSKADAKLKSVGLLGSSKSIRNDLENKEGVGTGSNKCDHSDDSGSCVVTSDSGSKLDCPAEVMKDDDNDIYGKSESDELCPLKRRKTEENCGPDEAQNEENRGPKESKNEGVTEKIVERRCTESEADAIVPETDLSLKHHSREKKLIDFRGKLYLAPLTTVGNLPFRRVCKELGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDFFGVQICGAYPDTVARTVELIEQECTVDFIDINMGCPIDIVVNKGAGSALLTKPTRMKSIVEVASGTVDKPITIKVRTAYFEGKNRIDSLIEDIGSWGASAVTIHGRSRQQRYSKLADWDYVYQCARKAPTTLPVVGNGDVFSFVDWNNHRTECPELATDMIARGALVKPWIFTEIKEQRHWDISSGERLNILKDFVNFGLEHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVVPQRLNWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDDFRFAPKHKSNAYDRAENG* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1815 687 SUPERFAMILY FMN-linked oxidoreductases 335 648 - -
Vra5g1815 687 Coils Coil 56 76 - -
Vra5g1815 687 Gene3D Aldolase class I 331 573 IPR013785 -
Vra5g1815 687 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 26 687 - -
Vra5g1815 687 Pfam Dihydrouridine synthase (Dus) 338 572 IPR035587 -
Vra5g1815 687 MobiDBLite consensus disorder prediction 1 87 - -
Vra5g1815 687 MobiDBLite consensus disorder prediction 219 235 - -
Vra5g1815 687 ProSiteProfiles Zinc finger C3H1-type profile. 82 113 IPR000571 GO:0046872
Vra5g1815 687 Gene3D - 77 153 - -
Vra5g1815 687 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 26 687 - -
Vra5g1815 687 MobiDBLite consensus disorder prediction 241 297 - -
Vra5g1815 687 ProSitePatterns Uncharacterized protein family UPF0034 signature. 419 437 IPR018517 GO:0008033|GO:0017150|GO:0050660
Vra5g1815 687 MobiDBLite consensus disorder prediction 200 297 - -
Vra5g1815 687 CDD DUS_like_FMN 335 570 IPR035587 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra5g1815 Dus 8.7e-51 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1815 K05544 - gmx:100783494 1188.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1815 5 24155853 24161123 Vra5g1815 5 24155853 24161123 ECH