Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1814 ATGGCTGGTTTCAGCGGTGATGAAACGGCACCGTTTTTCGGCTTCCTCGGAGCCGCAGCTGCCCTCGTGTTCTCCTGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCCATGGGTGTGATGAGACCTGAGCTAGTGATGAAGTCCATTGTTCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATTAGTACCGGTATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGTTACGCTCATCTCTCCTCTGGTCTTGCCTGTGGCTTGGCTGGGCTATCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGATTTGGGCCTTAG 375 0.496 MAGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRFGP* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1814 124 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vra5g1814 124 Gene3D - 10 123 IPR035921 -
Vra5g1814 124 PANTHER V-TYPE PROTON ATPASE SUBUNIT C3 3 121 - -
Vra5g1814 124 SUPERFAMILY F1F0 ATP synthase subunit C 86 120 IPR035921 -
Vra5g1814 124 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Vra5g1814 124 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 121 - -
Vra5g1814 124 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vra5g1814 124 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vra5g1814 124 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 124 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vra5g1814 124 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Vra5g1814 124 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1814 Vra-Chr5 24146685 24149759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1814 1 121 Primary Pumps ATPases(2) AT2G16510 98.347 2.45e-79 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1814 K02155 - gmx:100777816 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1814 5 24146685 24149759 Vra5g1814 5 24146685 24149759 ECH