Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1799 ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGCGGGAGTTCATCGTCCAGCAAACGCACTGCGAGGATTTTTTTTCCCTCAACGCCAACACCGTCGCCGGAGGCGACGATTTCTTCGTCGACGACCTATTTGACTTTTCAGACGGCTCTCTTCACTACGAACCACAAGAATACGTTGAAGAAAAAAAAAGTTTATCCGCCTCGTCGCAGTCAAAGGACCGTGGAGAAGACGATAGCAACTCTAATTCCACCGGAGTTTCCTACGATTCACTTTTCTCCGCCGAACTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTTGTTGATGATTCTCTCCCGGAGCTGTCTCTTTTATACCCGGTTCGTTCGGAGGAAGTGAACCGGCGGGTCGAACCGGAACCCTCAGCGAAGAAAACGCCTCGTTTTCCTTGTGAAACGAAGATAACAACCAAGACGAGAACCGTGCGGAATAGAAAACCAAACGCTCGCGTGTGGTCGTTGGGCCCGTTGCTCTCCCTCCCGTCCTCGCCGTCTTCGTGCTCTTCTTCCTCGACGGAGCCGCCCGCGAAGAAGCAGAAGAAGCGGGCCGAGGCCCAGCCCGTTGGGGCCCAGGTTCAGCGGCGGTGCAGTCACTGTCAAGTGCAGAAGACACCACAGTGGAGGACGGGCCCACTGGGCGCAAAAACCCTCTGCAACGCGTGCGGGGTCCGGTACAAATCGGGTCGGCTTTTTTCGGAGTACAGACCGGCCTGTAGCCCAACCTTCTGCAGCGATATTCACTCCAACAGCCACCGGAAAGTGTTGGAAATTCGCAAAAAGAAAGGGGTGTCTGGGGCGGAGGCCCATCCCCAGGCCCAAATGGTTCCCACCTGCTGA 900 0.5556 MEVAVAKALKPSLRREFIVQQTHCEDFFSLNANTVAGGDDFFVDDLFDFSDGSLHYEPQEYVEEKKSLSASSQSKDRGEDDSNSNSTGVSYDSLFSAELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEVNRRVEPEPSAKKTPRFPCETKITTKTRTVRNRKPNARVWSLGPLLSLPSSPSSCSSSSTEPPAKKQKKRAEAQPVGAQVQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKKKGVSGAEAHPQAQMVPTC* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1799 299 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355|GO:0043565
Vra5g1799 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 272 - -
Vra5g1799 299 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
Vra5g1799 299 SMART GATA_3 211 265 IPR000679 GO:0006355|GO:0043565
Vra5g1799 299 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Vra5g1799 299 MobiDBLite consensus disorder prediction 60 89 - -
Vra5g1799 299 PIRSF Txn_fac_GATA_plant 16 298 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vra5g1799 299 MobiDBLite consensus disorder prediction 179 195 - -
Vra5g1799 299 PANTHER GATA TRANSCRIPTION FACTOR 1 299 - -
Vra5g1799 299 Gene3D - 210 261 IPR013088 GO:0006355|GO:0008270
Vra5g1799 299 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Vra5g1799 299 MobiDBLite consensus disorder prediction 60 82 - -
Vra5g1799 299 MobiDBLite consensus disorder prediction 174 210 - -
Vra5g1799 299 Coils Coil 299 299 - -
Vra5g1799 299 PANTHER GATA TRANSCRIPTION FACTOR 1 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1799 Vra-Chr5 24027000 24028799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1799 40 282 C2C2-Gata Transcription Factor Family AT4G36240 43.307 7.27e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra5g1799 GATA 9.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1799 - - gmx:100780311 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1799 5 24027000 24028799 Vra5g1799 5 24027000 24028799 ECH
Vra2g0362 2 2774983 2776654 Vra5g1799 5 24027000 24028799 ECH