Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1796 ATGAAGATCCAGTGTGATGTCTGTGACAAAATGGAAGCCAAAATCTTCTGTCCTGCAGATGAAGCTGCTCTTTGCCATGCCTGCGATCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCTCGTTTCCCTCTCATCTTCCCCACTTCCAAAGACTTCCCTCTCTGTGATATCTGCCAAGAGAAGCGTGCGTATCTATTCTGCCAAGAAGACAGGGCATTGTTGTGCAGGGAATGTGACCTTCCAATCCATAGAGCGAATGAGCATACTCAGAAGCATAACAGGTTTCTTCTAACGGGGGTGAAGCTCTCGGCCACTTCTTTGGATTATGCTTCCTCCTCCACCAATGAAAATCTCAGCTCTTCTTGCAAGGTTGAAGACAACGTGGGCAGTGACACTGGCTCGGTTTCAACCAGCAGCATTTCTGAGTATTTGATCGAGACAATACCCGGTTACTGTTTCGAAGAACTCCTTGATGGTTCATTCGCACCTAATAATGGTTTCTGTAAGAAGCAGAATCATGATCATCTTTGGGAGTTTCAGGAGCAAGATCTAGCTCAGGAGTTAAGGAAATTCCAAATGGGGGATGTTATGGTTGTGCCGTTTCTTAAACTAGTTGTTCGATTGATAAAAAATCTAGACCAACTACTTGTAAAAATCTGTTGGGAAATATCTTCTATGATTTCGTTATCTGAATTTCTTTTTGGGTACTGTGCTTGCATTCTTTTTATAAACTAA 744 0.4341 MKIQCDVCDKMEAKIFCPADEAALCHACDRTIHHANKLATKHPRFPLIFPTSKDFPLCDICQEKRAYLFCQEDRALLCRECDLPIHRANEHTQKHNRFLLTGVKLSATSLDYASSSTNENLSSSCKVEDNVGSDTGSVSTSSISEYLIETIPGYCFEELLDGSFAPNNGFCKKQNHDHLWEFQEQDLAQELRKFQMGDVMVVPFLKLVVRLIKNLDQLLVKICWEISSMISLSEFLFGYCACILFIN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1796 247 CDD Bbox1_BBX-like 57 100 - -
Vra5g1796 247 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Vra5g1796 247 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vra5g1796 247 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vra5g1796 247 Gene3D Classic Zinc Finger 1 100 - -
Vra5g1796 247 CDD Bbox1_BBX-like 5 47 - -
Vra5g1796 247 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vra5g1796 247 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vra5g1796 247 SUPERFAMILY B-box zinc-binding domain 51 91 - -
Vra5g1796 247 PANTHER B-BOX ZINC FINGER PROTEIN 22 122 182 - -
Vra5g1796 247 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 123 - -
Vra5g1796 247 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 123 - -
Vra5g1796 247 PANTHER B-BOX ZINC FINGER PROTEIN 20 122 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1796 Vra-Chr5 23990962 23992238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1796 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 48.402 1.40e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vra5g1796 zf-B_box 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1796 - - gmx:100800981 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1796 5 23990962 23992238 Vra5g1796 5 23990962 23992238 ECH
Vra5g1796 5 23990962 23992238 Vra11g0756 11 6151563 6153584 ECH
Vra6g2061 6 37219828 37221626 Vra5g1796 5 23990962 23992238 PCT