Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1795 ATGCAAAGAAGAACAGAAGGAGAAGAAGAAGTAGTCTCAAGGGGTTCTAAGTGCCAAGACTGTGGGAATCAAGCCAAGAAGGAATGTTCATATTCAAGATGCAGAACTTGTTGCAAGAACAAAGGCTTTCAGTGCCAAACCCATATCAAGAGTACATGGACTCCTGTCGATAGGAGGCGCACCAAGGACAACTTTCACCCACATAATCTTCCTCAAAACCACAACCAGATCAATCCATATTCAGGTTTAGAGATGAAATTTCCTTGTGCTACGAGTTCGATGGCTATGTTTCGGTGCGTTCAGGTTCGGTCTGTGGATGATGCGGTTAACGAAATAGCGTATCAAACATCTGTGAACATCGGTGGGCATGTATTCAGTGGAATACTATATGATCAAGGCCCTGAACAAAGCTATAACATTAACAAGGGTGAGAGTTCCACTGCTCTTGTTGATGAACACCAGAATGCTTCAATCCACAGTAGAGATAGCAGTGGTGTAACTATAGCTTCTGCCGGTCACGCTGACCCTCTTTTTCCTCCACCACCGTATCCCTTTCCGCTTGCTTCCTTCAGACCCGGTATGCCATATTTCACATACCCAAGATCTTGA 609 0.4466 MQRRTEGEEEVVSRGSKCQDCGNQAKKECSYSRCRTCCKNKGFQCQTHIKSTWTPVDRRRTKDNFHPHNLPQNHNQINPYSGLEMKFPCATSSMAMFRCVQVRSVDDAVNEIAYQTSVNIGGHVFSGILYDQGPEQSYNINKGESSTALVDEHQNASIHSRDSSGVTIASAGHADPLFPPPPYPFPLASFRPGMPYFTYPRS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1795 202 PANTHER BNAC01G23660D PROTEIN 7 191 - -
Vra5g1795 202 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 7 191 IPR007818 GO:0003700|GO:0006355
Vra5g1795 202 Pfam Domain of unknown function (DUF702) 81 135 - -
Vra5g1795 202 Pfam Domain of unknown function (DUF702) 15 72 - -
Vra5g1795 202 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 17 59 IPR006510 -
Vra5g1795 202 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 86 134 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1795 Vra-Chr5 23979060 23980303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1795 18 202 C2H2 Transcription Factor Family AT3G51060 38.326 2.05e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vra5g1795 DUF702 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1795 - - pvu:PHAVU_009G004300g 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1795 5 23979060 23980303 Vra5g1795 5 23979060 23980303 ECH
Vra6g2062 6 37243122 37246030 Vra5g1795 5 23979060 23980303 ECH
Vra6g2062 6 37243122 37246030 Vra5g1795 5 23979060 23980303 PCT