Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1793 ATGGCTAAGCCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAACAAAACCATTAGAGCTGGTGATTGCGTGCTCATGCGACCGTCGGATCCGGCAAAACCCTCGTATGTGGCCAGGATTGAAAGGATCGAGGCGGATGCGCGTGGCGCAAATGTGAAAATTCATGTTCGCTGGTACTACAGGCCAGAGGAGTCAATTGGGGGTCGCCGCCAGTTTCACGGCTCAAAGGAGGTTTTTCTCTCTGATCACTTTGATGTTCAGAGCACCGACACAATCGAAGGCAAGTGTACGGTCCACAGCTTCAAGAGCTACACAAAACTGGATGCCGTTGGTAACGATGATTTCTTCTGTCGGTTTGAGTACAATTCCTCCACAGGTGCCTTCAATCCTGACAGAGTTGCAGTGTATTGTAAATGCGAGATGCCTTACAATCCTGATGACCTAATGGTCCAATGTGAGGGCTGCAGTGACTGGTTCCATCCTGCTTGCATAGACATGACTGTTGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGCTGCTCTGCCGAAGGTCAAAAAAAGTTGCAGAACTCTCATTCCGCTTCTAGACTCTCGGATACAAAGGTGGACACTAAACGCCGTCGTAGGTAA 651 0.4854 MAKPKAPRRTLESYSVKHINKTIRAGDCVLMRPSDPAKPSYVARIERIEADARGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSTDTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEGQKKLQNSHSASRLSDTKVDTKRRRR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1793 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Vra5g1793 216 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Vra5g1793 216 Gene3D - 2 135 IPR043151 -
Vra5g1793 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Vra5g1793 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
Vra5g1793 216 PANTHER OS08G0421900 PROTEIN 1 216 - -
Vra5g1793 216 SMART PHD_3 141 188 IPR001965 -
Vra5g1793 216 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 216 IPR045205 GO:0006325|GO:0035064
Vra5g1793 216 MobiDBLite consensus disorder prediction 195 216 - -
Vra5g1793 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Vra5g1793 216 Pfam PHD-finger 141 189 IPR019787 -
Vra5g1793 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Vra5g1793 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1793 Vra-Chr5 23954144 23959326 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1793 41 139 Core DNA Replication Machinery Family AT4G14700 31.313 9.40e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra5g1793 BAH 9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1793 - - gmx:100787968 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1793 5 23954144 23959326 Vra5g1793 5 23954144 23959326 ECH