Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1790 ATGGCAACTTACTACCCATGTTCAAGTAATCAAAGGGGTGCCGTGCCTATGCTTTGTCTTAGGGAGCCTTTGCATAATTCGTATCCCGAGACACCAATTTTGCCAAGCAATATGACATTGTTGTATATGAACTCTGGTTCATATTCTGAAGCATTACCTGGAAATTCTCAGCAGCAAAGCAATTGCTTTGTGGTTCCATCACCGTCAGTGGGTGCTTCAAATTCCACAGCTGAGCAGCAAGAAATATTGGCTAATATTGGTGGATACCAAATTGGGATTCATGATTTCAGTGCTTGGAGGGAGGGTAGAAGTGAGATGTTAGTCAGACAATCTATAGATGGACATAACTTGCAGGGCCAGGGATTATCTTTAAGCCTTGGAACCCACATGCCCTCAGGAATTCAACTGCCTTCTGTCCATGATAGGAATCATTGCTCAAATCTTGATTCGTTTTTGGGTGCAAATCCATCACTTTCAGCCAACGAGGGCTACCAAAATGGCTCCTCTAGACATTCTGAAAATTTTCCTCCCGTGTTACCTGAAGCTAGTCATGATTTGAACAAAGCAGATTTTTCATTTCCTGGAATTTCCAGTGTTGGAAGAACGGTTCCTAGCTCCAAATATCTCAAGGCAGTGCAACAACTGCTTGATGAAGTTGTTGATATCCGACAAGCTATTAAAAGACCTGAAACGAGAAGTCACGGAACACATGAGAACTCTCCGAAGAATTCCAAGGAGGGTGGTGAGCTCCTAGAAAACGAACGGCCTTCTGCAATTGGTGTACCAAATTCTCAAGCCTCAGCCAGCAACTCTTCTTGTGAGCTTTCACATGCTGAAAAACAAGATCTGCACAAGAAGTTAGCAAAGCTTCGGTCAATGTTGGATGAGGTTGACAGTAGGTATAAACAATATTACCAGAAGATGCAGAACGTGGTGTCATCATTTGATGTGGTAGCAGGATGTGGGGCAGCTAAACCATACACAGCCCTTGCTCTACAAACCATTTCATGCCATTTTCGGTGTTTGCGTGATTCAATCACTGGTCAAATTCGTGCAACACAAAAGAGCCTCGGGGAGCATGATGCTTCAGAAAGTAATAAAGGAGTTGGAATGGCAAGACTAAAGTTTGTGGACCATCAAGTGCGACAACAGAGGGCTCTTCAGCAGCTTGGTATGATGCAGCATGCATGGAGACCGCAAAGGGGGCTTCCAGAAAGCTCTGTTTCAATTCTCCGCGCATGGCTTTTTGAGCATTTCCTTCATCCATACCCAAAGGATTCCGAAAAGATCATGCTAGCAAGACAGACAGGCTTGACCCGAAGTCAGGTCTCAAATTGGTTCATAAATGCACGTGTGCGTCTGTGGAAGCCTATGATTGAGGATATGTACAAGCAAGATGTTTCTGATGTGGACATGGACTCAACTTCTTCATCTGAAAATGTCTCCAAGGCAACAAAAAGTGATGTCAAGATCTCCAATGATACGGTTGATGATTCACAGCACTGTCAGAGTCCAGTAGTAACCGATACAAATCATGGTGGTGGACAAGCTAAGGACTTTGGATATGATCAAGTTCTTGATGCAAAAATCATGGCATCCACTGGATTAGCTAGTCATGAGGTTGAAACAGAACATAGGTCAGGAAAGCAGTCTGGGGAGAAAAGGCCAAATTTGGATAATTGTGGTCTCTTCTCTGATAACATGGTTGTTCAATCTGATAGAGCTACTAATGATGACAGGTTTATAGCAGTTGGTTCAACGTGCCAAATGTCAGAGTTTGAGAGCTTCAAGTCAGGAAATGGAGTGTCTCTAACTTTGGGTTTACAGCATTGTGAAGGAGGTAATTTTTTGCCTGGTGAGACCCATCTCAGTTTGGTTTCCATGAGGGAAAATGGCATCTACCGCAGTGCAGCTGCAGCTTCTACAGTTGGAGTACATACAGCAGAACTTGAGCACGTTGGTGCTGGAAACCAGCGACAGAGGTTCAGTTCACCTCATATGTTTCATGATTTTGTTGTGTGA 2022 0.4377 MATYYPCSSNQRGAVPMLCLREPLHNSYPETPILPSNMTLLYMNSGSYSEALPGNSQQQSNCFVVPSPSVGASNSTAEQQEILANIGGYQIGIHDFSAWREGRSEMLVRQSIDGHNLQGQGLSLSLGTHMPSGIQLPSVHDRNHCSNLDSFLGANPSLSANEGYQNGSSRHSENFPPVLPEASHDLNKADFSFPGISSVGRTVPSSKYLKAVQQLLDEVVDIRQAIKRPETRSHGTHENSPKNSKEGGELLENERPSAIGVPNSQASASNSSCELSHAEKQDLHKKLAKLRSMLDEVDSRYKQYYQKMQNVVSSFDVVAGCGAAKPYTALALQTISCHFRCLRDSITGQIRATQKSLGEHDASESNKGVGMARLKFVDHQVRQQRALQQLGMMQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRSQVSNWFINARVRLWKPMIEDMYKQDVSDVDMDSTSSSENVSKATKSDVKISNDTVDDSQHCQSPVVTDTNHGGGQAKDFGYDQVLDAKIMASTGLASHEVETEHRSGKQSGEKRPNLDNCGLFSDNMVVQSDRATNDDRFIAVGSTCQMSEFESFKSGNGVSLTLGLQHCEGGNFLPGETHLSLVSMRENGIYRSAAAASTVGVHTAELEHVGAGNQRQRFSSPHMFHDFVV* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1790 673 MobiDBLite consensus disorder prediction 539 553 - -
Vra5g1790 673 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 624 - -
Vra5g1790 673 MobiDBLite consensus disorder prediction 496 511 - -
Vra5g1790 673 Gene3D - 393 470 - -
Vra5g1790 673 MobiDBLite consensus disorder prediction 537 560 - -
Vra5g1790 673 CDD homeodomain 397 458 IPR001356 GO:0003677
Vra5g1790 673 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
Vra5g1790 673 MobiDBLite consensus disorder prediction 470 489 - -
Vra5g1790 673 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 93 624 - -
Vra5g1790 673 Pfam Associated with HOX 203 347 IPR006563 -
Vra5g1790 673 SMART prehox3 197 348 IPR006563 -
Vra5g1790 673 SUPERFAMILY Homeodomain-like 398 463 IPR009057 -
Vra5g1790 673 MobiDBLite consensus disorder prediction 258 276 - -
Vra5g1790 673 MobiDBLite consensus disorder prediction 470 514 - -
Vra5g1790 673 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
Vra5g1790 673 MobiDBLite consensus disorder prediction 227 277 - -
Vra5g1790 673 Coils Coil 280 307 - -
Vra5g1790 673 MobiDBLite consensus disorder prediction 227 252 - -
Vra5g1790 673 SMART HOX_1 397 461 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1790 Vra-Chr5 23931325 23935307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1790 27 673 Homeobox Transcription Factor Family AT4G34610 38.088 1.28e-122 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra5g1790 POX 6.4e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1790 - - vra:111240485 1337.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1790 5 23931325 23935307 Vra5g1790 5 23931325 23935307 ECH