Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1784 ATGGCTTCGTCGAGTGGAACATCTTCAGGGTCGTCTCTGCTTCAGAATTCGGGTTCAGAGGAGGACCTGCAGGCGGTGATGGATGAGAGGAAGAGGAAGAGAATGATATCGAACCGCGAATCGGCGAGGCGATCCCGAATGAGGAAGCAGAAACACTTGGATGATCTGGCATCACTGGTGACTCAGCTGAGGAACGAGAATCACCAGATTCTGACATCGGTCACCCTCACCACCCAGAAGTACTTGGCGGTGGAGGCGGAGAACTCGGTGCTGAGAGCACAGGTAAGCGAGTTGAGCCACAGGTTAGAGTCTCTGAACGAGATCAACCACTTCTTGAACGCCACCAATGGTGTCTTTGGGCCTCCGGGCCCATCTCCAACCTCCTTCCTTGAGCCCGAGGGTAGTAGCAACTTCTTCAACAACCCTTTCAACATGGCATATCTCAGCCAACCGATCATGGCTTCTGCAGATATGTTGCAGTACTGA 486 0.5309 MASSSGTSSGSSLLQNSGSEEDLQAVMDERKRKRMISNRESARRSRMRKQKHLDDLASLVTQLRNENHQILTSVTLTTQKYLAVEAENSVLRAQVSELSHRLESLNEINHFLNATNGVFGPPGPSPTSFLEPEGSSNFFNNPFNMAYLSQPIMASADMLQY* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1784 161 PANTHER BZIP TRANSCRIPTION FACTOR 1 159 - -
Vra5g1784 161 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Vra5g1784 161 SUPERFAMILY Leucine zipper domain 30 81 IPR046347 GO:0003700|GO:0006355
Vra5g1784 161 Coils Coil 88 108 - -
Vra5g1784 161 Pfam bZIP transcription factor 30 72 IPR004827 GO:0003700|GO:0006355
Vra5g1784 161 MobiDBLite consensus disorder prediction 1 50 - -
Vra5g1784 161 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Vra5g1784 161 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 159 - -
Vra5g1784 161 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g1784 161 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
Vra5g1784 161 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 91 IPR004827 GO:0003700|GO:0006355
Vra5g1784 161 MobiDBLite consensus disorder prediction 23 50 - -
Vra5g1784 161 Gene3D - 28 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1784 Vra-Chr5 23895707 23896990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1784 24 161 bZIP Transcription Factor Family AT4G34590 54.676 7.02e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra5g1784 bZIP_1 4.9e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1784 K25786 - gmx:778171 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1784 5 23895707 23896990 Vra5g1784 5 23895707 23896990 ECH