Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1768 ATGTTGCACTGTGCGAACACGTCGGGGAATCTGGCTGGGGACATGACAGTGTGGGAAAGACAGAGGGCGAGGATGAAGTGGCAAGAAGAGCAAGGGTACTTTTCTGCGTTCGACGCTCTTTTCTCTTCTTCTTCTCAAGATTCCTTCTTGCTGCCTGCTGATTCCGGTTGTGCGCTTGGTGAAGTGGTAGCTCAGGCTCAGGCTCAGCCTCAGCCTCAGCCTCGCTCCATGAATAAGCCATCTGTTCATGGGTTTGATGAAAGTTCTTCGATTTCAAGAACTTTTAGTTGTCCACCTGCTTTGGTGGAGCCCAGGCCCACTGGCTCTTCGATTGGGAAAGAGAGTTCCAAGAAAAGGAAACCCGAGAAGCTTCACAGTGCTAAGTTTGTTACAGAAAATGATACGAAAGACAAGAGGATCAAACTGGGTTCCGACGACGATGAACAATCCAAAATCACAGGGAGCCCCAACAGCAACGCCAACACCGATACCAACAAAAGAGAAACTTGTGCAGATACTTCAAATTCGAAGCAAAATTCCAAAGTCTCCGAGATTCAAAATCAAAAGCCCGATTACATTCACGTCCGCGCGCGTCGCGGCCAAGCCACCGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCTGGTTGCAACAAAATCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAGGTTGAGTTTCTGTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACCTCAGTATTGATGATCTATTTGAAAAAGAGGTGTTTCCTTGTGCTGCGAATTTTCCAAACATTGGAATGTCATCAGATTTGACGAACTCTGGCTATGTTCAATTCAATTCACCACAAGAAATGGTGTCGTATGGGGGATTAGACACGGTGATTAACCCTCCCTACATGGGCCTAAAAAGGAGTATAAGTGCCCATGTATCAGTGCCTGAAACATATCTTCACTCATCCTCTTTCACACAATTGCTTCCCTCCTCAACATGGGAAGGTGATTTCCAAAACCTTTTGAATTTGGATTTTGATCAAGTGCGAGCCACATCTTTCCCTTCTCATTTGTCCTCAGGACTGGTTGAAGCTGGCAATCATCTAAAGATGGAGATGTAG 1191 0.4517 MLHCANTSGNLAGDMTVWERQRARMKWQEEQGYFSAFDALFSSSSQDSFLLPADSGCALGEVVAQAQAQPQPQPRSMNKPSVHGFDESSSISRTFSCPPALVEPRPTGSSIGKESSKKRKPEKLHSAKFVTENDTKDKRIKLGSDDDEQSKITGSPNSNANTDTNKRETCADTSNSKQNSKVSEIQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDLSIDDLFEKEVFPCAANFPNIGMSSDLTNSGYVQFNSPQEMVSYGGLDTVINPPYMGLKRSISAHVSVPETYLHSSSFTQLLPSSTWEGDFQNLLNLDFDQVRATSFPSHLSSGLVEAGNHLKMEM* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1768 396 CDD bHLH_AtBPE_like 191 276 - -
Vra5g1768 396 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 73 376 IPR024097 GO:0006355
Vra5g1768 396 SMART finulus 207 257 IPR011598 GO:0046983
Vra5g1768 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 269 IPR036638 GO:0046983
Vra5g1768 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 251 IPR011598 GO:0046983
Vra5g1768 396 MobiDBLite consensus disorder prediction 112 148 - -
Vra5g1768 396 Pfam Helix-loop-helix DNA-binding domain 205 252 IPR011598 GO:0046983
Vra5g1768 396 MobiDBLite consensus disorder prediction 149 187 - -
Vra5g1768 396 MobiDBLite consensus disorder prediction 65 189 - -
Vra5g1768 396 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 73 376 - -
Vra5g1768 396 Gene3D - 198 272 IPR036638 GO:0046983
Vra5g1768 396 MobiDBLite consensus disorder prediction 66 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1768 Vra-Chr5 23820446 23822994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1768 14 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 41.667 8.74e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g1768 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1768 - - gmx:100798855 518.464