Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1766 ATGGCTTCTGCAGAAGTTGAGTTCCGATGCTTTGTCGGTGGGCTTGCTTGGGCCACTGACAGCGATGCTCTTGAGAAAGCCTTCTCACCGTATGGCCAGATCCTCGAATCGAAGGTCATCAACGACCGCGAAACTGGAAGATCAAGAGGATTTGGATTTGTGACCTTCGCCACGGAGCAGGCGATGAGAGACGCTATCGATGGTATGAACGGCCAGAACCTTGACGGCCGTAACATCACCGTCAACGCGGCTCAGTCCCGTGGAAGAGGTGGTGGTGGCGGCGGCGGCGGTGGTTATGGAAGCGGCGGTGGTGGAGGTTACGGTGGGGGTAGCGGTGGAGGAGGATATGGACGAGGTGGTGGAGGAGGTGGTTACGGTGGAGGCGGCCGCCGTGAAGGTGGTTATAACCGTAATGGTGGTGGTGGGGGTTATGGTGGGGGCGGCGGTGGATACGGAGGTGGTGGTGGTGGTTATGGAGGTAGTAGAGACCGTGGATATGGGGATGGTGGGTCCCGCTACTCGAGAGGAGGTGGTGCGTCCGACGGTGGAAGCTGGAGGAATTAG 564 0.5904 MASAEVEFRCFVGGLAWATDSDALEKAFSPYGQILESKVINDRETGRSRGFGFVTFATEQAMRDAIDGMNGQNLDGRNITVNAAQSRGRGGGGGGGGGYGSGGGGGYGGGSGGGGYGRGGGGGGYGGGGRREGGYNRNGGGGGYGGGGGGYGGGGGGYGGSRDRGYGDGGSRYSRGGGASDGGSWRN* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1766 187 Gene3D - 2 107 IPR012677 -
Vra5g1766 187 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vra5g1766 187 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vra5g1766 187 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 144 - -
Vra5g1766 187 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vra5g1766 187 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Vra5g1766 187 MobiDBLite consensus disorder prediction 152 187 - -
Vra5g1766 187 PANTHER GEO13361P1-RELATED 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1766 Vra-Chr5 23802732 23803891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1766 10 81 Eukaryotic Initiation Factors Gene Family AT2G23350 41.667 5.06e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1766 - K13195 gmx:100777821 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1766 5 23802732 23803891 Vra5g1766 5 23802732 23803891 ECH