Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1765 ATGGGGATAGTGTGGTTCCGGTTGTTGTTGTTGCTGGTGGTGAGTCAGGTGACATTGGAGCAGATTGAGCCACTGAGTTCCTCTGAGGAGCGAGAATCGTTACTTGAACTGAGGGCTTCTCTGGGGTTGAGGAGCAAGGAATGGCCAAGAAAACCAGACCCTTGTTTACTCTGGGTTGGCATCACATGCCAGAATGGTCGAGTCGTTGGGATCAGTATCTCTGGGTTTAAAAGAACCAGACTTGGGAGGAGGAACCCGCAATTTGCAGTGGATGCTTTGGCCAATTTCACTCTCTTGCAGTCCTTCAATGCCTCTAATTTCCTCCTTCCTGGACCTATTCCCGATTGGTTTGGTCTCTCCCTTCCTTCTCTCAGAGTGCTTGATCTTCGTTCTTGTTCCATTGTGAATGCTATTCCCTCCACTCTCGGCAATTTGACCAACCTCTCTAGTCTCTATCTTTCTGACAACAACCTCATTGGGAATGTTCCGGAGTCTCTGGGTCAACTCTCTGCCCTTTCGGTTCTTGATCTTTCCAGGAATTCTCTCGCTGGCTCCATACCAACATCTTTTGCCTTTCTTGGGAATCTTTCTTCCCTTGACATGTCTGCTAATTTTTTGTCGGGTCCGATTCCCCCCGAAATAGGGTCTCTTTCCAGGTTACAGTACTTGAATCTTTCCAACAACGGACTTGCCACTTTGCCTACTCAATTGGGGGGTCTAACTAGCTTAGTTGTCCTTGATCTTAGTCAGAATTCTTTTGCCAGTGGAGGACTGCCTCAGGATTTGGTTGGGTTTAGGAACTTGCGGCAGATGATACTCACAAACAGCATGCTCACGGGGGCTCTGCCCGGGAGATTGTTTACTGGTTCATTGCAGTTGCAGTTCCTAGTGCTGAAGCAGAACAATTTTAGTGGTGCTTTGCCTGTTGAGTTGTGGTCTCTGCCAAGATTGAGCTTCCTTGATGTGTCTGCCAATAATTTCAGTGCTCTGCTTCCTAATTCGAGTTTGGCTGCTAATGCTACTGTTGCGGTGCTCAATATTTCGCACAATAAGTTTTATGGAAACCTCACTCCTGCTTTAAGAAGGTTTGGGTTTATTGATCTTTCAAACAACTATTTTGAGGGCAAGGTTCTGGATTTCATGCATAATGTATCTCTAGGTAGCAACTGTCTCCAGAACGCCACAGATCAGAGGTCAACAGCGGAATGTGCATCGTTTTATGAAGAGAGGGGGCTCAGTTTTGATAATTTTGGACAGCCGAATACAACAACACCTCCTGCCTCAGAAAGCTCCAGGAAGAGCAATAAGACTAAGATTATACTGGCTGCAGTCTTGGGTGGATTGGGTTTAATTGCACTTTTGGTGTTGCTAGTGGTTCTGTTGCTTCTGTGTGTTCGTAAGAGGGGTAACTCAAGTCAGAGAGGAAATGGTGTGGGTCCTGCGCCTGTTGGCAGCAGTCCTCCAAACCCCGGTGTACCAATCGAATTTCCAAATGTAGGGGACTCGTTTACATATCATCAGCTGCTCCAGGCAACAGGAGATTTCAATAATGCAAATCTTATCAAACATGGACACACTGGGGACTTCTTCAATGGTGTTTTGGAAAGTGGGATTCCTGTCGTCATCAAAAGGATCGACATGCGTTCAGCTAAAAAAGAAGCTTACCTGTCGGAGTTGGAGTTCTTCAATAAGGTTTCTCATCAGAGATTCGTTCCATTGTTAGGTCATTGTTTAGAAAATGAGAATGAGAAGTTTCTGGTTTATAAAAGCATGCCAAATGGGGACTTGTCTAATTGCTTGTACTACAAAAACACTACATCCGAGGATGGTACTTTGCAATCACTGGACTGGATAACCAGGTTAAAAATTGCTACTGGAGCCGCAGAGGCCCTGTCGTATCTACATCATGAATGTGTGCCACCCATTGTTCACAGGGATATTCAAGCAAGCAGTATACTTCTTGACGACAAATACGAAGTTCGGTTGGGGAGTCTAAGTGAAGCCTGTGCTCAAGAAGGTGACATTCATCAAAGTAAGATCACCCGGTTTCTGCGGTTGCCTCAGTCCTCAGACCAAGGCCCATCTGGTTATTCAACAACAATTTGTGCCTATGACGTTTATTGCTTGGGAAAAGTTTTACTCGAACTGGTGACCGGTAGGCTGGGAATGAGTGCAGCCAGTGAAGCCGAAGTAAAGGAATGGTTTGATCAGATTCTGCCTTGCATTAATATGTATGAGAAGGAGCTGGTGACGAAAATTATCGATCCATCGATGGTTGTCGACGAAGATTTCCTTGAGGAAGTGTGGGCTATAGCCATTGTTGCCAGGTCTTGCTTAAACCCCAAACCTTCAAGGAGACCCCCAATGAGATATATTCTGAAGGCTTTGGAAAATCCTTTGAAGGTGGTGAGGGAAGAAAATTCCAGTTCTGCGCGGCTCAGAGCAACCTCTTCCAGAGGTTCTTGGAACGCTGCTACTTTGTTTGGGAGTTGGCGTCAGAGTTCTTCTGATGTAACAGCAACTCCGGCAGCCTCAGGTGTAAAACTAGAAAGAGTTGGTAGTTTGAAACTGTCAGGAACCACCGGGTCAAGGTCGCAGTCGCAGGGTAGTTTTCACAATGGCGGCGGTGAGATTTCATTGTCGCGGAGACGACACTCGAAGGAGATATTCCCAGAGCCATCAGGGGTTGATGATGTAGAGAGGTTGGAGCTGGAATAA 2718 0.4617 MGIVWFRLLLLLVVSQVTLEQIEPLSSSEERESLLELRASLGLRSKEWPRKPDPCLLWVGITCQNGRVVGISISGFKRTRLGRRNPQFAVDALANFTLLQSFNASNFLLPGPIPDWFGLSLPSLRVLDLRSCSIVNAIPSTLGNLTNLSSLYLSDNNLIGNVPESLGQLSALSVLDLSRNSLAGSIPTSFAFLGNLSSLDMSANFLSGPIPPEIGSLSRLQYLNLSNNGLATLPTQLGGLTSLVVLDLSQNSFASGGLPQDLVGFRNLRQMILTNSMLTGALPGRLFTGSLQLQFLVLKQNNFSGALPVELWSLPRLSFLDVSANNFSALLPNSSLAANATVAVLNISHNKFYGNLTPALRRFGFIDLSNNYFEGKVLDFMHNVSLGSNCLQNATDQRSTAECASFYEERGLSFDNFGQPNTTTPPASESSRKSNKTKIILAAVLGGLGLIALLVLLVVLLLLCVRKRGNSSQRGNGVGPAPVGSSPPNPGVPIEFPNVGDSFTYHQLLQATGDFNNANLIKHGHTGDFFNGVLESGIPVVIKRIDMRSAKKEAYLSELEFFNKVSHQRFVPLLGHCLENENEKFLVYKSMPNGDLSNCLYYKNTTSEDGTLQSLDWITRLKIATGAAEALSYLHHECVPPIVHRDIQASSILLDDKYEVRLGSLSEACAQEGDIHQSKITRFLRLPQSSDQGPSGYSTTICAYDVYCLGKVLLELVTGRLGMSAASEAEVKEWFDQILPCINMYEKELVTKIIDPSMVVDEDFLEEVWAIAIVARSCLNPKPSRRPPMRYILKALENPLKVVREENSSSARLRATSSRGSWNAATLFGSWRQSSSDVTATPAASGVKLERVGSLKLSGTTGSRSQSQGSFHNGGGEISLSRRRHSKEIFPEPSGVDDVERLELE* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1765 905 Coils Coil 899 905 - -
Vra5g1765 905 MobiDBLite consensus disorder prediction 470 491 - -
Vra5g1765 905 PANTHER RECEPTOR-LIKE PROTEIN 55 181 846 - -
Vra5g1765 905 PANTHER RECEPTOR-LIKE PROTEIN 55 6 184 - -
Vra5g1765 905 Gene3D Ribonuclease Inhibitor 191 416 IPR032675 -
Vra5g1765 905 MobiDBLite consensus disorder prediction 857 875 - -
Vra5g1765 905 Pfam Protein kinase domain 521 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1765 905 Gene3D Phosphorylase Kinase; domain 1 494 589 - -
Vra5g1765 905 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Vra5g1765 905 MobiDBLite consensus disorder prediction 857 905 - -
Vra5g1765 905 SUPERFAMILY Protein kinase-like (PK-like) 488 796 IPR011009 -
Vra5g1765 905 MobiDBLite consensus disorder prediction 878 905 - -
Vra5g1765 905 Pfam Leucine Rich repeats (2 copies) 219 253 IPR025875 -
Vra5g1765 905 Gene3D Ribonuclease Inhibitor 27 190 IPR032675 -
Vra5g1765 905 ProSiteProfiles Protein kinase domain profile. 515 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1765 905 SMART LRR_typ_2 217 239 IPR003591 -
Vra5g1765 905 SMART LRR_typ_2 169 194 IPR003591 -
Vra5g1765 905 SMART LRR_typ_2 240 265 IPR003591 -
Vra5g1765 905 SMART LRR_typ_2 121 145 IPR003591 -
Vra5g1765 905 SMART LRR_typ_2 314 337 IPR003591 -
Vra5g1765 905 PANTHER BNAA07G03560D PROTEIN 6 184 - -
Vra5g1765 905 PANTHER BNAA07G03560D PROTEIN 181 846 - -
Vra5g1765 905 SUPERFAMILY L domain-like 91 411 - -
Vra5g1765 905 ProSiteProfiles Leucine-rich repeat profile. 219 241 IPR001611 GO:0005515
Vra5g1765 905 Gene3D Transferase(Phosphotransferase) domain 1 591 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1765 Vra-Chr5 23782713 23787984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1765 30 688 Miscellaneous Gene Families AT2G16250 56.757 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vra5g1765 Pkinase 1.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1765 - - gmx:100805769 1441.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1765 5 23782713 23787984 Vra5g1765 5 23782713 23787984 ECH