Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1764 ATGCGGGTGAAGCACAGCTCCGGCGCGATCCCGCTGGTATCGAAGGAGATCCTGGAGGTGAATACTCTGGAGCTGAAAATCGAAGAGGTGGATGAGGAGGATCCGAAGAAGGAGGAGATGAAGCTTGAAGATAGTCCGTCGGTGGAGTCACCGAACATAGGGTGGGGACGCTGGTATAGCCTCAGAGAGCTTGAGGCTGCGACGCAAGGGTTCGCCGAAGGGAATGTGATCGGAGAAGGAGGGTATGGGATTGTGTATAGAGGAAATTTGCTCGACGGTTCTGTCGTCGCGGTCAAAAATCTTCTCAACAACAAGGGGCAGGCAGAGAAAGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTGAGGCACAAGAATTTGGTGGGGTTAGTTGGATATTGTGCAGAAGGTGCTCAAAGGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTGCATGGTGACGTAGGACCTGTTAGCCCCTTGACATGGGATATAAGAATGAAGATTGCTGTTGGGACTGCGAAAGGGCTAGCCTACTTGCACGAAGGATTAGAACCCAAAGTTGTCCATCGAGATGTAAAATCCAGTAACATTCTTTTGGACAAAAAGTGGAATGCTAAAGTATCAGACTTTGGACTGGCCAAGCTCTTAGGGCCTGAGAAAAGCTATGTGACAACGCGTGTAATGGGGACATTTGGATATGTGTCACCTGAGTATGCAAGCACGGGTATGCTTAATGAAGGTAGCGATGTGTATAGTTTTGGGATTCTACTTATGGAGCTAATTACAGGGAGGAGTCCGATCGATTATTCTAGACCACCTGGAGAGATGAACTTGGTTGATTGGTTTAAAGGAATGGTTGCAAATCGTCTTGGTGATGAACTAGTTGATCCTTTAATAGATATTCAACCCTCTCAAAGATCTTTGAAACGAGCTTTACTTGTTTGTCTGCGCTGTATAGATTTGGATGTCAGTAAGCGACCAAAGATGGGCCAAATTGTTCACATGCTTGAGGCTGACGATTTTCCCTTTCGTTCTGAACATCGAACAAATAGAGAGAAAGATCCTGTTTATTCTACAGCAGCTGGTTCCAGCAAGATTCCATATCCAACAAGGCATGTAGAGCCAGTAGATAAATCAAGCTGGAGATGA 1167 0.4584 MRVKHSSGAIPLVSKEILEVNTLELKIEEVDEEDPKKEEMKLEDSPSVESPNIGWGRWYSLRELEAATQGFAEGNVIGEGGYGIVYRGNLLDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGAQRMLVYEYVDNGTLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWNAKVSDFGLAKLLGPEKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMELITGRSPIDYSRPPGEMNLVDWFKGMVANRLGDELVDPLIDIQPSQRSLKRALLVCLRCIDLDVSKRPKMGQIVHMLEADDFPFRSEHRTNREKDPVYSTAAGSSKIPYPTRHVEPVDKSSWR* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1764 388 Pfam Protein kinase domain 73 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1764 388 CDD STKc_IRAK 77 343 - -
Vra5g1764 388 SUPERFAMILY Protein kinase-like (PK-like) 50 343 IPR011009 -
Vra5g1764 388 Gene3D Phosphorylase Kinase; domain 1 32 146 - -
Vra5g1764 388 PANTHER OS03G0227900 PROTEIN 45 359 - -
Vra5g1764 388 PANTHER OS01G0323000 PROTEIN 45 359 - -
Vra5g1764 388 Coils Coil 13 33 - -
Vra5g1764 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Vra5g1764 388 SMART serkin_6 71 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1764 388 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Vra5g1764 388 ProSiteProfiles Protein kinase domain profile. 71 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1764 388 MobiDBLite consensus disorder prediction 351 388 - -
Vra5g1764 388 Gene3D Transferase(Phosphotransferase) domain 1 147 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1764 Vra-Chr5 23777615 23781435 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1764 6 366 Receptor kinase-like Gene Family AT4G02010 43.396 2.34e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vra5g1764 Pkinase 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1764 - - vra:106762137 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1764 5 23777615 23781435 Vra5g1764 5 23777615 23781435 ECH
Vra2g0416 2 3234845 3238341 Vra5g1764 5 23777615 23781435 ECH