Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1761 ATGGTACATGCAGATGGGTTTCAGAAAAGCGAGTATGGGTACAACAACAATAAGGTTGAGCACGTTATGCATATTCCTCCACATCCTGTTCCAGTTGGAGGTTGGTCAGCAACCCAGGGTGTTAGTTCTGAAATGAGCTCTGCCAGTTACTCTGGGCCCCATGGTCCTGTTTTGCCACCTCCGCACCCCACGGTGGCCCTCGGATTCAACCAAAGCTCCTTCACTTTCGAGGAGCTCTCGGCTGCCACTGCTGGCTTTAGCCAACACAACCTGCTGGGCCAGGGTGGCTTCGGATTCGTCCACAAAGGTGTTCTACCCAATGGCAAGGAAATTGCAGTGAAGAGCCTCAAATCCACTAATGGCCAAGGAGACAGAGAATTCCAAGCTGAGGTTGACATCATCAGCCGCGTCCACCATCGCCATCTTGTCTCACTCGTCGGCTATTGCATCTCACAAGCAGACAGGCTCCTCGTTTATGAGTTTGTGCCTAACAACACCCTCGAATACCACCTTCATCGAAAGGGTCAACCTGTGATGGATTGGAATACCAGGCTCAAAATTGCGATCGGATCGGCTAAAGGACTTGCTTATTTACACGAGGATTGTCACCCTCGTATCATTCACCGAGACGTAAAGGGTGCAAACATTCTACTTGAGAACAACTTCGAAGCCAAAGTGGCGGATTTTGGGTTGGCAAAGATTAGTCAAGAAGACACTAACACTCACGTTTCCACTCGTGTAATGGGAACATTCGGGTATTTGGCTCCAGAGTATGCATCAACCGGTAAGCTAACTGACAAATCTGATGTGTTCTCGTTCGGTATTATGCTTTTGGAGCTCATAACAGGTCGGGAACCTGTGGACAACACTGGGGAATTTGAAGATAGTTTGGCCGACTGGGCTAGACCACTCTGTACAAAGGCAATGGAGGATGGAAGTTTTGAAGGGCTTGTGGATCCACGTTTAGAGGGTAATTATGACGAGCGCCAAATGTCTTGTATGGTGGCTTGTGCTGCATTTAGCGTAAGGTACTCGGCGAAGAAGCGACCGAAAATGAGTCAGATTGTGAGAGTGCTGGAGGGTGATGTGTCAGTAGAAGTGCTTGGTTACGAGGGAGTGAAACCTGGGTTCGGCGGCGAAAGCGGGGAGTATAAAGTTGACATGATGAAGTTCAGGAAACTAGCATTAGAAGAGAGTGGCAGTGAACAATCATCTGCTGAATATGGCAATGCCGGCAGGAGGGTAGGAGCCCGAATGCACACTCCTTAA 1269 0.4917 MVHADGFQKSEYGYNNNKVEHVMHIPPHPVPVGGWSATQGVSSEMSSASYSGPHGPVLPPPHPTVALGFNQSSFTFEELSAATAGFSQHNLLGQGGFGFVHKGVLPNGKEIAVKSLKSTNGQGDREFQAEVDIISRVHHRHLVSLVGYCISQADRLLVYEFVPNNTLEYHLHRKGQPVMDWNTRLKIAIGSAKGLAYLHEDCHPRIIHRDVKGANILLENNFEAKVADFGLAKISQEDTNTHVSTRVMGTFGYLAPEYASTGKLTDKSDVFSFGIMLLELITGREPVDNTGEFEDSLADWARPLCTKAMEDGSFEGLVDPRLEGNYDERQMSCMVACAAFSVRYSAKKRPKMSQIVRVLEGDVSVEVLGYEGVKPGFGGESGEYKVDMMKFRKLALEESGSEQSSAEYGNAGRRVGARMHTP* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1761 422 MobiDBLite consensus disorder prediction 400 422 - -
Vra5g1761 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vra5g1761 422 Gene3D Transferase(Phosphotransferase) domain 1 162 367 - -
Vra5g1761 422 CDD STKc_IRAK 92 361 - -
Vra5g1761 422 ProSiteProfiles Protein kinase domain profile. 86 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1761 422 SMART serkin_6 86 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1761 422 SUPERFAMILY Protein kinase-like (PK-like) 66 359 IPR011009 -
Vra5g1761 422 Gene3D Phosphorylase Kinase; domain 1 63 161 - -
Vra5g1761 422 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 12 399 - -
Vra5g1761 422 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 12 399 - -
Vra5g1761 422 Pfam Protein tyrosine and serine/threonine kinase 89 357 IPR001245 GO:0004672|GO:0006468
Vra5g1761 422 ProSitePatterns Protein kinases ATP-binding region signature. 92 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1761 Vra-Chr5 23759532 23761662 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1761 33 417 Trihelix Transcription Factor Family AT1G70460 57.653 3.70e-146 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vra5g1761 PK_Tyr_Ser-Thr 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1761 - - var:108330544 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1761 5 23759532 23761662 Vra5g1761 5 23759532 23761662 ECH