Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1754 ATGGACGAGGGCAAAGCAGCAGCTCAGAAATCTGTTCAGACTTTTGATCCTCAAAAGGCCCCCAAAAGGAACAAGTTTGCTTTCGCTTGTGCCATATTGGCTTCCATGACTTCCATATTACTTGGCTATGACGTTGGGGTGATGAGTGGAGCGGTGATATATATAAAGAGGGACCTGAAACTGACGGACGTGCAAATCGAGATCGTGGTAGGAATCATCAACCTTTACTGTCTGATTGGTTCGTGTCTCGCCGGGAGAACCTCGGATTGGATCGGTCGGCGTTACACGATCGTTGTGGCTGGAGGCATCTTCTTCGCCGGAGCCATCCTGATGGGATTCTCTCCAAACTATCCCTTTTTGATGTTCGCGCGGTTTGTGGCGGGCGTGGGCATCGGTTATGCTCTGATGATTGCTCCGGTCTACACGGCGGAAGTGTCCCCTCCTTCGTGTCGTGGTTTTTTGACCTCCTTCCCCGAGGTATTCGTGAATGGAGGGATATTACTGGGATACATATCAAACTACTGCTTTTCGAAGCTCCCACTTCACCTGGGATGGAGGATGATGCTGGGAGTGGGGGCGGTGCCTTCGGTGATCCTGGCGGTGGGAGTGTTAGCCATGCCGGAGTCACCACGATGGCTGGTCATGAGAGGTAGGCTCGGCGAAGCTACAAAAGTTCTCAACAAAATGTCCGACTCTCCCCAAGAGGCTCAGCTCAGGCTAGCAGATATCAAAGCCGCGGCTGGGATCCCGGAGGACTGCAACGACGACGTCGTTCAAGTGACCAACCAGAATAGCGGTGGTGAGGGTGTATGGAAAGAGCTAATCCTTTACCCTACACCCGCGGTGCGTCACATCCTCATCTCCGCTCTGGGCCTCCACTTCTTCCAACAGGCTTCCGGCATAGACGCCGTGGTGCTGTACAGCCCCGAGATTTTCAAAAAGGCTGGCCTGGAATCCGACGCCGAGCAGCTTCTGGCGACCGTGGCCGTTGGATTCGCCAAGACCGTTTTCATCTTGGTGGCTACGTTTTTGTTGGATCGGGTCGGGCGTAGGCCCTTGTTATTGACCAGCGTTGGCGGTATGGTCTTCTCGCTTCTCACGCTGGGCGTAAGCCTCACCATCATTGATCGGTCACGCGCCGTGATGAAATGGGCCATTGGCCTGAGTATAGCGATGGTTTTGTCCTACGTGTCGACGTTCTCCGTTGGGGCGGGTCCCATAACGTGGGTGTACAGCTCGGAGATCTTCCCGTTGAGGCTACGCGCCCAGGGTGCGGCTATGGGAGTTGTGGTGAATAGGGTGACGAGTGGAGTTATCTCAATGACGTTCTTGTCCCTGTCTGATAAGATCACTATTGGTGGGGCCTTCTTCATCTTCGGGGGAATCGCGATGTGTGGATGGATCTTTTTCTTTACCATGCTCCCCGAAACACAGGGCAAGACCCTTGAGGAAACCGAAGGGTCTTTTGGTAAATTCTTGGCATGGTCCAAAAGCAAGGGTAATAAGGACTGTGAGAACAATGCAGAGATACAATTGGCGAATTAG 1545 0.5333 MDEGKAAAQKSVQTFDPQKAPKRNKFAFACAILASMTSILLGYDVGVMSGAVIYIKRDLKLTDVQIEIVVGIINLYCLIGSCLAGRTSDWIGRRYTIVVAGGIFFAGAILMGFSPNYPFLMFARFVAGVGIGYALMIAPVYTAEVSPPSCRGFLTSFPEVFVNGGILLGYISNYCFSKLPLHLGWRMMLGVGAVPSVILAVGVLAMPESPRWLVMRGRLGEATKVLNKMSDSPQEAQLRLADIKAAAGIPEDCNDDVVQVTNQNSGGEGVWKELILYPTPAVRHILISALGLHFFQQASGIDAVVLYSPEIFKKAGLESDAEQLLATVAVGFAKTVFILVATFLLDRVGRRPLLLTSVGGMVFSLLTLGVSLTIIDRSRAVMKWAIGLSIAMVLSYVSTFSVGAGPITWVYSSEIFPLRLRAQGAAMGVVVNRVTSGVISMTFLSLSDKITIGGAFFIFGGIAMCGWIFFFTMLPETQGKTLEETEGSFGKFLAWSKSKGNKDCENNAEIQLAN* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1754 514 ProSitePatterns Sugar transport proteins signature 2. 126 151 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra5g1754 514 PANTHER SUGAR TRANSPORTER 13 508 - -
Vra5g1754 514 TIGRFAM SP: MFS transporter, sugar porter (SP) family 6 485 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g1754 514 Gene3D MFS general substrate transporter like domains 21 491 IPR036259 -
Vra5g1754 514 PRINTS Sugar transporter signature 38 48 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g1754 514 PRINTS Sugar transporter signature 121 140 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g1754 514 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g1754 514 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g1754 514 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g1754 514 ProSiteProfiles Major facilitator superfamily (MFS) profile. 30 478 IPR020846 GO:0022857
Vra5g1754 514 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 13 508 IPR045262 GO:0015144
Vra5g1754 514 Pfam Sugar (and other) transporter 30 486 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra5g1754 514 SUPERFAMILY MFS general substrate transporter 17 486 IPR036259 -
Vra5g1754 514 CDD MFS_PLT 33 484 IPR044776 GO:0005351
Vra5g1754 514 ProSitePatterns Sugar transport proteins signature 1. 84 101 IPR005829 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1754 Vra-Chr5 23683948 23686430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1754 17 514 Organic Solute Cotransporters AT3G18830 71.571 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1754 - - gmx:102670364 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1754 5 23683948 23686430 Vra5g1754 5 23683948 23686430 ECH
Vra2g0429 2 3332325 3334762 Vra5g1754 5 23683948 23686430 ECH