Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1753 ATGGAGGATGGTGAGAAACCCACGGGTAATTCCCATGGCATTTCTGATATGGATGTTGTTGATGCGGCTTTGCATGGCCAGCATGTGTCGTCTTCCCCTACTGACAATTCCCCTGCTCAGCAACAGCAGGATCAAGTAATGCTCGAACAGGGCGATGATAACAAAAACGGGGATTCTGATCCTAGTAATGTACCAGAGACTAGTGTAATTAGCGAGAATCAGTTTGAGGTTGAAGATTCCAAGACGGTTTCGCACCATGAACTGATCACTCCTAAGCCTAAAGAAAAGAACATTAGGGAAATGAAGAATGTGCTAAATGATACCGAGATGACTGAGTATGATGAGTATGGCACACCTCTGGACCGGGAAACATTTATGAAAGAGCTTGAGAATTTCTACAGAGAGCGGTCCTTGGAATTTAAGCCTCCTAAGTTTTACGGAGAGCCACTAAATTGCCTTAAGTTGTGGAGAGCTGTTATCAGACTGGGTGGCTATGATGTGGTAACTGGCTCCAAGTTGTGGCGACAAGTAGGAGAGTCTTTCAACCCCCCAAAGACATGCACTACAGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGACTGGGGAGCTACAGCTCCCTGTTGGATCATTCCATCAATCTCCAAATGTAGAAAAAGAGACTACTGTTTACCAGGCTCTAGGATCAGGTAGAGCACGAAGGGATGCAGCAGCCCGTGCAATGCAAGGTTGGCATGCTCAACGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGCTACTAAGGACAAGAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTAAAAAGCATTGGTATGATTAATAAACAGAGGACCCCAGCTGGTTTGGAGCATGCTGAGAAAGCTGCAAATGTTGAAGGAGACAGACAATTGGTCACAGCAGTGGTTGACATTGGACCCCCAGCCGACTGGGTGAAGATCAACGTACGAGAAACTAAAGATTGTTTTGAGGTGTATGCCCTAGTTCCCGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTGGTTATAACTGGTTTGCCGGAACACATTGATAATCCATGGGGAATTACCCCATTTAAAAAGGTTGTGAACTTACCTGCAAGAATTGATCCCCTTCAGACATCCGCTGTTGTTAGTTTGCATGGTCGGCTATTTGTACGGGTTCCCTTTGAGCAGGGATCGGTATGA 1260 0.4595 MEDGEKPTGNSHGISDMDVVDAALHGQHVSSSPTDNSPAQQQQDQVMLEQGDDNKNGDSDPSNVPETSVISENQFEVEDSKTVSHHELITPKPKEKNIREMKNVLNDTEMTEYDEYGTPLDRETFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHKRETGELQLPVGSFHQSPNVEKETTVYQALGSGRARRDAAARAMQGWHAQRLLGYGEVAEPATKDKNFSSTPKREKNLKSIGMINKQRTPAGLEHAEKAANVEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGSV* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1753 419 MobiDBLite consensus disorder prediction 27 50 - -
Vra5g1753 419 Gene3D - 120 218 IPR036431 GO:0003677
Vra5g1753 419 CDD ARID 121 206 - -
Vra5g1753 419 CDD ACD_sHsps_p23-like 334 413 - -
Vra5g1753 419 SUPERFAMILY HSP20-like chaperones 327 414 IPR008978 -
Vra5g1753 419 ProSiteProfiles ARID domain profile. 119 210 IPR001606 GO:0003677
Vra5g1753 419 Gene3D - 316 418 IPR008978 -
Vra5g1753 419 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 33 416 IPR045147 GO:0006357
Vra5g1753 419 MobiDBLite consensus disorder prediction 57 77 - -
Vra5g1753 419 Pfam ARID/BRIGHT DNA binding domain 122 206 IPR001606 GO:0003677
Vra5g1753 419 SMART ARID_2 116 206 - -
Vra5g1753 419 MobiDBLite consensus disorder prediction 1 85 - -
Vra5g1753 419 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 33 416 - -
Vra5g1753 419 SUPERFAMILY ARID-like 107 217 IPR036431 GO:0003677
Vra5g1753 419 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 318 419 IPR002068 -
Vra5g1753 419 SMART bright_3 120 211 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1753 Vra-Chr5 23669431 23677384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1753 28 416 ARID Transcription Factor Family AT1G76510 62.051 3.36e-159 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vra5g1753 ARID 4.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1753 - - gmx:100777965 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1753 5 23669431 23677384 Vra5g1753 5 23669431 23677384 ECH