Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1751 ATGGCGTACCAAGCGATCCAGGGTCCGAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAGCTACTCAATTCTCCTTTCGGAGACACCACTTACACCAAAGTCTTCGTCGGAGGGTTGGCCTGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGAGCAGTTCGGCGAGATTCTCGAGGCCGTTGTCATCACCGATAAGAACACAGGGCGATCCAAGGGCTATGGTTTCGTGACTTTCCGGGATCCCGAGGCTGCAAGGAGAGCCTGTGCTGATCCAACTCCTGTTATTGATGGTAGAAGGGCGAACTGTAACCTAGCTTCACTTGGTCGACCACGACCCCCTTTGCCTTATGGACGGGTAAGACCTGCCTCCCCTTATGTTGGAAGTGTGCAAACACCTCGAGGTGGCTATGTTGGAGGCTTTGGGTACCAGCAACCGCTTTCTTACAGCTATCAACAAGGATTAGTTTACCCTCCATATGGGTATACGGCATATGGACCAGAGTACATCTACCCACAGAGTCTGTATAACCCATATATGGGGCAACAGTACCTTCAGTTATATGGAGTGCCTGGAACAGTGAATACAACTATTTACCCATATGGACAATTGGGTCAGGCTGTACCTAGTGGTCATGGTTATTCGGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGGGGATCTAATGTTAATGCCATAACAACTTCACCTATGCCTGCCATTCAAGCCTCATTTCCCAGTGGAATTGCTGCACCGGTTCCTGGCCAACCGCAATTTATTGTTCCTGCTCCTTCTCCTCAGTTCATGCAAGGTGGTGGTCCTGACCAAACAGCTGGGTGA 858 0.5082 MAYQAIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYGRVRPASPYVGSVQTPRGGYVGGFGYQQPLSYSYQQGLVYPPYGYTAYGPEYIYPQSLYNPYMGQQYLQLYGVPGTVNTTIYPYGQLGQAVPSGHGYSAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQASFPSGIAAPVPGQPQFIVPAPSPQFMQGGGPDQTAG* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1751 285 SMART rrm1_1 33 105 IPR000504 GO:0003723
Vra5g1751 285 Gene3D - 4 117 IPR012677 -
Vra5g1751 285 SUPERFAMILY RNA-binding domain, RBD 31 144 IPR035979 GO:0003676
Vra5g1751 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Vra5g1751 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Vra5g1751 285 CDD RRM_RBM24_RBM38_like 32 107 - -
Vra5g1751 285 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 281 - -
Vra5g1751 285 PANTHER BOULE-RELATED 1 281 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1751 Vra-Chr5 23652451 23657521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1751 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 3.15e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1751 - - gmx:100779244 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1751 5 23652451 23657521 Vra5g1751 5 23652451 23657521 ECH